FamEvent
Family Age-at-Onset Data Simulation and Penetrance Estimation
Description
Simulates age-at-onset traits associated with a segregating major gene in family data obtained from population-based, clinic-based, or multi-stage designs. Appropriate ascertainment correction is utilized to estimate age-dependent penetrance functions either parametrically from the fitted model or nonparametrically from the data. The Expectation and Maximization algorithm can infer missing genotypes and carrier probabilities estimated from family's genotype and phenotype information or from fitted models. Plot functions include pedigrees of simulated families and predicted penetrance curves based on specified parameter values. For more information see Choi, Y.-H., Briollais, L., He, W. and Kopciuk, K. (2021) FamEvent: An R Package for Generating and Modeling Time-to-Event Data in Family Designs, Journal of Statistical Software 97 (7), 1-30.
Downloads
599
Last 30 days
5503rd
1.4K
Last 90 days
3.9K
Last year
Trend: +13.2% (30d vs prior 30d)
0
Last 30 days
34
Last 90 days
110
Last year
Trend: -100% (30d vs prior 30d)
2
Last 7 days
20
Last 30 days
0
All-time
autoCRAN-only: this name is served only by autoCRAN, so the count is exact.
CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | OK |
| r-devel-linux-x86_64-debian-gcc | OK |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check History
OK 13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 20, 2026
NOTE 11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE May 10, 2026
CRAN incoming feasibility
Maintainer: ‘Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Yun-Hee",
family = "Choi",
role = c("aut", "cre"),
...[truncated]...
person(given = "Wenqing",
family = "He",
role = "aut"),
person(given = "Laurent",
family = "Briollais",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Yun-Hee",
family = "Choi",
role = c("aut", "cre"),
...[truncated]...
person(given = "Wenqing",
family = "He",
role = "aut"),
person(given = "Laurent",
family = "Briollais",
role = "aut"))
as necessary.
WARNING 11 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE May 9, 2026
CRAN incoming feasibility
Maintainer: ‘Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Yun-Hee",
family = "Choi",
role = c("aut", "cre"),
...[truncated]...
person(given = "Wenqing",
family = "He",
role = "aut"),
person(given = "Laurent",
family = "Briollais",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Yun-Hee",
family = "Choi",
role = c("aut", "cre"),
...[truncated]...
person(given = "Wenqing",
family = "He",
role = "aut"),
person(given = "Laurent",
family = "Briollais",
role = "aut"))
as necessary.
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Yun-Hee",
family = "Choi",
role = c("aut", "cre"),
...[truncated]...
person(given = "Wenqing",
family = "He",
role = "aut"),
person(given = "Laurent",
family = "Briollais",
role = "aut"))
as necessary.
CRAN incoming feasibility
Maintainer: ‘Yun-Hee Choi <yun-hee.choi@schulich.uwo.ca>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Yun-Hee",
family = "Choi",
role = c("aut", "cre"),
...[truncated]...
person(given = "Wenqing",
family = "He",
role = "aut"),
person(given = "Laurent",
family = "Briollais",
role = "aut"))
as necessary.
Code
Structure
Lines of code
9,083
Files
128
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
29
Internal functions
53
Recent export changes
Testing & CI
Has tests
No
Test-to-code ratio
0.00
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Return-value doc rate
100%
\dontrun example ratio
11.1%
Roxygen coverage
100%
Has pkgdown
No
NEWS present
No
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
44.4%
Unsafe pattern score
0
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
3.3.0
System requirements
–
C++ standard
–
License
GPL (>= 2)
License flags
SPDX valid, OSI approved
History
Versions
10
First release
2016-02-09
Latest release
2026-05-14
Avg cadence
503 days
Cold removal rate
100%
Dep drift
6
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/cran-code-metrics.