EvaluateCore

0.1.5

Quality Evaluation of Core Collections

4packages depend

40.1Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by J. AravindFirst published 2020-06-035 releasesCRAN page ↗GitHub ↗

Implements various quality evaluation statistics to assess the value of plant germplasm core collections using qualitative and quantitative phenotypic trait data according to Odong et al. (2015) doi:10.1007/s00122-012-1971-y.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EvaluateCore", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("aravind-j/EvaluateCore")

Development version from aravind-j/EvaluateCore. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-evaluatecore

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EvaluateCore

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EvaluateCore

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 4.7 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 477 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 96%
Return-value docs: 96%
References docs: 82%

Downloads

40.1K

CRAN downloads in the past year

Rank #5,093 · ~110/day · ~3.3K/mo

Releases R versions

Daily download trend is not available in this view yet.

39930 days

1.8K90 days

40.1K1 year

Compare downloads with other packages →

Also on127 r2u12 autocran

Repository

GitHub ↗ aravind-j/evaluatecore

1Stars

0Forks

0Open issues

0Open PRs

5Releases

220Commits

2Contributors

rcore-collectionsgermplasmpgrplant-genetic-resourcesgenebankcore-evaluation

220 commits · Last activity 2026-04-29

Stars over time

2023-12-08 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 5 families in the upstream repository

Checks run against github.com/aravind-j/evaluatecore on 2026-07-19.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Research and citation (2)

CITATION.cffcodemeta.json

Show all practices

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (20)

agricolaebootcarclusterdplyr entropy ggcorrplot ggplot2 ggtextgrDevicesgridExtra kSamples mathjaxr missMDA psych reshape2 Rdpackstatstibble vegan

LinkingTo (0)

none

Suggests (6)

corehunter httr pander RCurl rJava XML

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

4direct

0indirect

DiversityStats LEAVcore SampleCore rpcss

Code & Tests

Code Composition

R 4,893 (67%)Rd 2,446 (33%)

Code characteristics

Cyclomatic complexity: 3.0 median / 30 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

30 24 exported

Complexity

5.2 avg / 30 max

Call network

30 nodes / 35 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 2

Name	Class	Rows × Cols	Also ships in
cassava_CC	data.frame	168 × 26	–
cassava_EC	data.frame	1,684 × 26	–

People & History

People (5)

Maintainer (1)

J. Aravind

Author, Maintainer

Authors (4)

J. Aravind

Author, Maintainer

Vikender Kaur

Author

Joghee Nanjundan

Author

Dhammaprakash Pandhari Wankhede

Author

ICAR-NBGPR

Listed in earlier versions (1)

Wankhede

no longer listed · 0.1.1 to 0.1.5

Package Timeline

5 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.5Latest
2026-04-22 · current release · diff ↗
0.1.4
2025-12-18 · diff ↗
unarchivedReturned to CRAN
2025-12-18
R
R 4.5.0 released · 2025-04-11
archivedRemoved from CRAN
2025-04-05
email to the maintainer is undeliverable
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
0.1.3
2022-07-03 · diff ↗
unarchivedReturned to CRAN
2022-07-03
archivedRemoved from CRAN
2022-05-24
check problems were not corrected in time
R
R 4.2.0 released · 2022-04-22
0.1.2
2021-06-12 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.1.1
2020-06-03
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2020-06-03
Total releases: 5 / 6 yrs
License: GPL-2 | GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 35 KB / 2 files
Download size: 266 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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