EpiILM

1.5.3

Spatial and Network Based Individual Level Models for Epidemics

0packages depend

4.2Kdownloads / year

35.7%test coverage

13/13checks pass

Overview

About

Maintained by Waleed AlmutiryFirst published 2017-04-1411 releasesCRAN page ↗GitHub ↗

Provides tools for simulating from discrete-time individual level models for infectious disease data analysis. This epidemic model class contains spatial and contact-network based models with two disease types: Susceptible-Infectious (SI) and Susceptible-Infectious-Removed (SIR).

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EpiILM", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("waleedalmutiry/EpiILM")

Development version from waleedalmutiry/EpiILM. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-epiilm

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EpiILM

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EpiILM

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 6.6 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.04

35.7%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-03-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 92%
Documented parameters: 100%
Return-value docs: 86%
References docs: 54%

Downloads

4.2K

CRAN downloads in the past year

Rank #9,098 · ~11/day · ~348/mo

Releases R versions

Daily download trend is not available in this view yet.

25330 days

1.2K90 days

4.2K1 year

Compare downloads with other packages →

Also on419 r2u42 autocran53 c2d4u

Repository

GitHub ↗ waleedalmutiry/epiilm

6Stars

2Forks

0Open issues

0Open PRs

0Releases

36Commits

4Contributors

36 commits · Last activity 2020-09-30

Stars over time

2023-05-25 · 62026-07-07 · 6

Repository practices

Upstream repositoryBeta

Checks run against github.com/waleedalmutiry/epiilm on 2026-07-26.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

4 external dependencies (excludes base and recommended)

Depends (7)

coda adaptMCMC LaplacesDemongraphicsstatsutilsR (>= 4.5.0)

Imports (1)

methods

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Waleed Almutiry

Author, Maintainer · added in 1.5

Authors (3)

Waleed Almutiry

Author, Maintainer · added in 1.5

Rob Deardon

Author, Thesis advisor · added in 1.1

Vineetha Warriyar K. V.

Author

Listed in earlier versions (3)

Vineetha Warriyar. K. V.

no longer listed · 1.0 to 1.5.2

and Rob Deardon

no longer listed · 1.5 to 1.5.2

no longer listed · 1.5.3

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.5.3Latest
2025-09-26 · current release · diff ↗
unarchivedReturned to CRAN
2025-09-26
archivedRemoved from CRAN
2025-06-13
issues were not corrected despite reminders
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
1.5.2
2020-09-30 · diff ↗
1.5.1
2020-06-29 · diff ↗
R
R 4.0.0 released · 2020-04-24
1.5
2020-03-12 · diff ↗
unarchivedReturned to CRAN
2020-01-21
archivedRemoved from CRAN
2020-01-16
check issues were not corrected in time Differences from check output, platform-dependent
R
R 3.6.0 released · 2019-04-26

Show 10 earlier events

R
R 3.5.0 released · 2018-04-23
1.4.2
2018-03-09 · diff ↗
1.4.1
2018-02-18 · diff ↗
1.4
2018-02-03 · diff ↗
1.3
2017-12-07 · diff ↗
1.2
2017-04-22 · diff ↗
R
R 3.4.0 released · 2017-04-21
1.1
2017-04-17 · diff ↗
1.0
2017-04-14
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-04-14
Total releases: 11 / 9 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 4.5.0
Bundled data: 1.3 KB / 1 file
Download size: 553 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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