EcoEnsemble

1.2.0

A General Framework for Combining Ecosystem Models

0packages depend

4Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Michael A. SpenceFirst published 2022-10-109 releasesCRAN page ↗GitHub ↗

Fit and sample from the ensemble model described in Spence et al (2018): "A general framework for combining ecosystem models"doi:10.1111/faf.12310.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("EcoEnsemble", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("CefasRepRes/EcoEnsemble")

Development version from CefasRepRes/EcoEnsemble. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-ecoensemble

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-EcoEnsemble

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-EcoEnsemble

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-fedora-clang
NOTE r-devel-linux-x86_64-fedora-gcc

Slowest check: 67.8 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.43

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-05-20
11 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-19
11 OK · 1 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-04-22
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-05
8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-29
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-03-22
8 OK · 5 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
9 OK · 5 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 437 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 30%
Documented parameters: 97%
Return-value docs: 100%
References docs: 65%

Downloads

CRAN downloads in the past year

Rank #6,597 · ~11/day · ~333/mo

Releases R versions

Daily download trend is not available in this view yet.

43930 days

1.5K90 days

4K1 year

Compare downloads with other packages →

Also on462 r2u32 autocran

Repository

GitHub ↗ cefasrepres/ecoensemble

1Stars

0Forks

0Open issues

0Open PRs

1Releases

101Commits

7Contributors

License GPL-3.0 · 101 commits · Last activity 2026-04-28 · 0% stars, 30d

Stars over time

2026-05-15 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

3 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/cefasrepres/ecoensemble on 2026-07-19.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

21 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5.0

Imports (12)

methodsRcpp matrixcalc RcppParallel rstan (>= 2.26.0)rstantools dplyr ggplot2 reshape2 tibble cowplot posterior

LinkingTo (6)

BH Rcpp RcppEigen RcppParallel rstan StanHeaders

Suggests (5)

rmarkdown kableExtra knitr testthatmgcv

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (5)

Maintainer (1)

Michael A. Spence

Author, Maintainer

Authors (5)

Michael A. Spence

Author, Maintainer

Thomas I. J. Bartos

Author · added in 1.1.2

Luke E. K. Broadbent

Author · added in 1.2.0

James A. Martindale

Author

Michael J. Thomson

Author

Package Timeline

9 releases. Pick two to compare their code metrics. R releases are shown for context.

1.2.0Latest
2026-04-27 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.2
2025-03-18 · diff ↗
1.1.0
2024-08-19 · diff ↗
R
R 4.4.0 released · 2024-04-24
1.0.5
2023-09-18 · diff ↗
1.0.4
2023-05-02 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.0.3
2023-03-29 · diff ↗
1.0.2
2023-03-17 · diff ↗
1.0.1
2022-11-04 · diff ↗
unarchivedReturned to CRAN
2022-11-04
archivedRemoved from CRAN
2022-10-24
issues were not corrected in time
1.0.0
2022-10-10
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-10-10
Total releases: 9 / 4 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.5.0
Bundled data: 8.8 KB / 1 file
Download size: 4.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →