DSAIDE

1.0.0

Dynamical Systems Approach to Infectious Disease Epidemiology (Ecology/Evolution)

0packages depend

4.4Kdownloads / year

90.5%test coverage

13/13checks pass

Overview

About

Maintained by Andreas HandelFirst published 2017-03-0212 releasesCRAN page ↗GitHub ↗

Exploration of simulation models (apps) of various infectious disease transmission dynamics scenarios. The purpose of the package is to help individuals learn about infectious disease epidemiology (ecology/evolution) from a dynamical systems perspective. All apps include explanations of the underlying models and instructions on what to do with the models.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DSAIDE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("andreashandel/DSAIDE")

Development version from andreashandel/DSAIDE. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dsaide

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DSAIDE

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DSAIDE

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.8 min · r-oldrel-macos-x86_64

Code health

Yes

Tests · ratio 0.19

90.5%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 96%
Documented parameters: 100%
Return-value docs: 97%
References docs: 12%

Downloads

4.4K

CRAN downloads in the past year

Rank #10,232 · ~12/day · ~364/mo

Releases R versions

Daily download trend is not available in this view yet.

33930 days

1K90 days

4.4K1 year

Compare downloads with other packages →

Also on137 r2u40 autocran27 c2d4u

Repository

GitHub ↗ andreashandel/dsaide

1Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2026-07-27

Stars over time

2025-01-31 · 262026-07-28 · 1

Repository practices

Upstream repositoryBeta

5 development-tooling and community-health practices detected across 4 families in the upstream repository

Checks run against github.com/andreashandel/dsaide on 2026-07-30.

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (2)

R >= 4.0.0shiny

Imports (12)

adaptivetau deSolve dplyr ggplot2 gridExtra lhs nloptr plotly rlangstatsutilsXML

LinkingTo (0)

none

Suggests (8)

covr devtools emoji knitr pkgdown rmarkdown roxygen2 testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (12)

Maintainer (1)

Andreas Handel

Author, Maintainer

Authors (1)

Andreas Handel

Author, Maintainer

Contributors (11)

Cody Dailey

Contributor · added in 0.9.0

Isaac Chun-Hai Fung

Contributor · added in 0.8.0

Ronald Galiwango

Contributor · added in 0.8.2

Salil Goyal

Contributor · added in 0.9.6

Spencer Hall

Contributor · added in 0.5.0

Ben Listyg

Contributor · added in 0.7.0

Brian McKay

Contributor · added in 0.5.0

John Rossow

Contributor · added in 0.5.0

Show 3 more contributors

Sina Solaimanpour

Contributor

Alexis Vittengl

Contributor · added in 0.9.0

Henok Woldu

Contributor · added in 0.7.0

Listed in earlier versions (4)

Isaac Fung

no longer listed · 0.7.0

Christine Casey

no longer listed · 0.8.2 to 0.8.3

Chase Golden

no longer listed · 0.8.2 to 0.8.3

Kevin Spiegel

no longer listed · 0.8.2 to 0.8.3

Package Timeline

12 releases. Pick two to compare their code metrics. R releases are shown for context.

1.0.0Latest
2026-07-28 · current release · diff ↗
R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.9.6
2023-08-23 · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
0.9.3
2021-07-23 · diff ↗
R
R 4.1.0 released · 2021-05-18
0.9.1
2021-03-22 · diff ↗
0.9.0
2021-02-02 · diff ↗
R
R 4.0.0 released · 2020-04-24
0.8.3
2020-01-09 · diff ↗
0.8.2
2019-07-04 · diff ↗
R
R 3.6.0 released · 2019-04-26
0.8.0
2019-03-30 · diff ↗

Show 7 earlier events

0.7.0
2018-08-07 · diff ↗
R
R 3.5.0 released · 2018-04-23
0.6.0
2017-09-30 · diff ↗
0.5.0
2017-08-07 · diff ↗
R
R 3.4.0 released · 2017-04-21
0.4.0
2017-03-02
R
R 3.3.0 released · 2016-05-03

Package metadata

First published: 2017-03-02
Total releases: 12 / 9 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0.0
Bundled data: 0.5 KB / 2 files
Download size: 3.2 MB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Epidemiology

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