DOVE

1.11

Durability of Vaccine Efficacy

0packages depend

5.5Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Shannon T. HollowayFirst published 2021-03-087 releasesCRAN page ↗

Implements maximum likelihood methods for evaluating the durability of vaccine efficacy in a randomized, placebo-controlled clinical trial with staggered enrollment of participants and potential crossover of placebo recipients before the end of the trial. Lin, D. Y., Zeng, D., and Gilbert, P. B. (2021) doi:10.1093/cid/ciab226 and Lin, D. Y., Gu, Y., Zeng, D., Janes, H. E., and Gilbert, P. B. (2021) doi:10.1093/cid/ciab630.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("DOVE", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dove

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-DOVE

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-DOVE

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.8 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-04-22
12 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 1 NOTE · 1 WARNING · 1 ERROR · 0 FAILURE
WARNING2026-03-10
12 OK · 1 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSYes · 33% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 33%

Downloads

5.5K

CRAN downloads in the past year

Rank #6,262 · ~15/day · ~457/mo

Releases R versions

Daily download trend is not available in this view yet.

35430 days

1.6K90 days

5.5K1 year

Compare downloads with other packages →

Also on523 r2u29 autocran

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (3)

R >= 3.5.0methodssurvival

Imports (4)

RcppstatsgraphicsRcppArmadillo

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (2)

rmarkdown knitr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 2,735 (57%)C++ 1,044 (22%)Vignettes 546 (11%)Rd 506 (10%)C 4 (0%)

Code characteristics

Object systems

S32S4 generic2S4 method6

Cyclomatic complexity: 3.0 median / 19 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

68 3 exported

Complexity

5 avg / 19 max

Call network

68 nodes / 62 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

Per-function coverage is not measured for this package yet.

Datasets

Bundled datasets · 1

Name	Class	Rows × Cols	Also ships in
doveData	data.frame	40,000 × 7	–

People & History

People (4)

Maintainer (1)

Shannon T. Holloway

Author, Maintainer · added in 1.9

Authors (4)

Shannon T. Holloway

Author, Maintainer · added in 1.9

Yu Gu

Author · added in 1.7

Danyu Lin

Author

Donglin Zeng

Author

Listed in earlier versions (1)

Shannon Holloway

no longer listed · 1.5 to 1.8

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.11Latest
2025-12-20 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.10
2023-12-14 · diff ↗
R
R 4.3.0 released · 2023-04-21
1.9
2022-06-07 · diff ↗
R
R 4.2.0 released · 2022-04-22
1.8
2021-10-12 · diff ↗
1.7
2021-09-06 · diff ↗
1.6
2021-06-02 · diff ↗
R
R 4.1.0 released · 2021-05-18
1.5
2021-03-08
R
R 4.0.0 released · 2020-04-24

Package metadata

First published: 2021-03-08
Total releases: 7 / 5 yrs
License: GPL-2 OSI
Minimum R: ≥ 3.5.0
Bundled data: 103 KB / 1 file
Download size: 477 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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