DBTC

0.1.0

Dada-BLAST-Taxon Assign-Condense Metabarcode Analysis

0packages depend

5.4Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Robert G YoungFirst published 2024-04-271 releasesCRAN page ↗

First using 'dada2' R tools to analyse metabarcode data, the 'DBTC' package then uses the BLAST algorithm to search unknown sequences against local databases, and then takes reduced matched results and provides best taxonomic assignments.

Install

R (CRAN)Ubuntu (r2u)

install.packages("DBTC", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-dbtc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 10.9 min · r-devel-linux-x86_64-fedora-clang

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-05-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

Documentation signals are not tracked yet for this package.

Downloads

5.4K

CRAN downloads in the past year

Rank #8,039 · ~15/day · ~450/mo

DBTC Releases R versions

Daily download trend is not available in this view yet.

28530 days

1.3K90 days

5.4K1 year

Compare downloads with other packages →

Also on120 r2u

Repository

GitHub ↗ rgyoung6/dbtc

0Stars

0Forks

0Open issues

0Open PRs

0Releases

Last activity 2024-04-29

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/rgyoung6/dbtc on 2026-07-19.

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (0)

none

Imports (9)

dada2 ggplot2parallelpbapply plyr ShortReadstatstaxonomizrutils

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (1)

Maintainer (1)

Robert G Young

Author, Maintainer, Copyright holder

Authors (1)

Robert G Young

Author, Maintainer, Copyright holder

Robert G Young

Author, Maintainer, Copyright holder

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2024-04-27
Total releases: 1 / 2 yrs
License: GPL-2 | GPL-3 OSI
Download size: 54 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Report a problem with this page →