CpGassoc
Association Between Methylation and a Phenotype of Interest
Description
Is designed to test for association between methylation at CpG sites across the genome and a phenotype of interest, adjusting for any relevant covariates. The package can perform standard analyses of large datasets very quickly with no need to impute the data. It can also handle mixed effects models with chip or batch entering the model as a random intercept. Also includes tools to apply quality control filters, perform permutation tests, and create QQ plots, manhattan plots, and scatterplots for individual CpG sites.
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CRAN Check Status
Show all 13 flavors
| Flavor | Status |
|---|---|
| r-devel-linux-x86_64-debian-clang | NOTE |
| r-devel-linux-x86_64-debian-gcc | NOTE |
| r-devel-linux-x86_64-fedora-clang | OK |
| r-devel-linux-x86_64-fedora-gcc | OK |
| r-devel-windows-x86_64 | OK |
| r-oldrel-macos-arm64 | OK |
| r-oldrel-macos-x86_64 | OK |
| r-oldrel-windows-x86_64 | OK |
| r-patched-linux-x86_64 | OK |
| r-release-linux-x86_64 | OK |
| r-release-macos-arm64 | OK |
| r-release-macos-x86_64 | OK |
| r-release-windows-x86_64 | OK |
Check details (2 non-OK)
CRAN incoming feasibility
Maintainer: ‘R Barfield <barfieldrichard8@gmail.com>’
No Authors@R field in DESCRIPTION.
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Authors@R: c(person(family = "Barfield",
role = "aut"),
person(family = "R.",
role = "aut"),
person(family = "Conneely",
role = "aut"),
person(family = "K.",
role = "aut"),
person(family = "Kilaru,V",
role = "aut"),
person(given = "R",
family = "Barfield",
role = "cre",
email = "barfieldrichard8@gmail.com"))
as necessary.
Found the following (possibly) invalid file URI:
URI: barfieldrichard8@gmail.com
From: inst/doc/CpGassoc.pdf
CRAN incoming feasibility
Maintainer: ‘R Barfield <barfieldrichard8@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(family = "Barfield",
role = "aut"),
person(family = "R.",
role = "aut"),
person(family = "Conneely",
role = "aut"),
person(family = "K.",
role = "aut"),
person(family = "Kilaru,V",
role = "aut"),
person(given = "R",
family = "Barfield",
role = "cre",
email = "barfieldrichard8@gmail.com"))
as necessary.
Found the following (possibly) invalid file URI:
URI: barfieldrichard8@gmail.com
From: inst/doc/CpGassoc.pdf
Check History
NOTE 12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 10, 2026
CRAN incoming feasibility
Maintainer: ‘R Barfield <barfieldrichard8@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(family = "Barfield",
role = "aut"),
person(family = "R.",
...[truncated]...
family = "Barfield",
role = "cre",
email = "barfieldrichard8@gmail.com"))
as necessary.
Found the following (possibly) invalid file URI:
URI: barfieldrichard8@gmail.com
From: inst/doc/CpGassoc.pdf
CRAN incoming feasibility
Maintainer: ‘R Barfield <barfieldrichard8@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(family = "Barfield",
role = "aut"),
person(family = "R.",
...[truncated]...
family = "Barfield",
role = "cre",
email = "barfieldrichard8@gmail.com"))
as necessary.
Found the following (possibly) invalid file URI:
URI: barfieldrichard8@gmail.com
From: inst/doc/CpGassoc.pdf