CongreveLamsdell2016

1.0.3

Distance Metrics for Trees Generated by Congreve and Lamsdell

0packages depend

2.8Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Martin R. SmithFirst published 2019-02-054 releasesCRAN page ↗GitHub ↗

Includes the 100 datasets simulated by Congreve and Lamsdell (2016) doi:10.1111/pala.12236, and analyses of the partition and quartet distance of reconstructed trees from the generative tree, as analysed by Smith (2019) doi:10.1098/rsbl.2018.0632.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CongreveLamsdell2016", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("ms609/CongreveLamsdell2016")

Development version from ms609/CongreveLamsdell2016. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-congrevelamsdell2016

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CongreveLamsdell2016

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CongreveLamsdell2016

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 16.4 min · r-devel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-07-03
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-05-17
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-03-30
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-12
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 1 earlier snapshots

ERROR2026-03-10
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Documentation

READMEYes · 178 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 69%
Return-value docs: 50%
References docs: 43%

Downloads

2.8K

CRAN downloads in the past year

Rank #13,982 · ~8/day · ~231/mo

Releases R versions

Daily download trend is not available in this view yet.

26330 days

78390 days

2.8K1 year

Compare downloads with other packages →

Also on220 r2u31 autocran

Repository

GitHub ↗ ms609/congrevelamsdell2016

1Stars

0Forks

0Open issues

0Open PRs

3Releases

206Commits

3Contributors

206 commits · Last activity 2024-02-29 · 0% stars, 30d

Stars over time

2026-04-19 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/ms609/congrevelamsdell2016 on 2026-07-19.

Continuous integration (1)

Travis CI

Reproducibility and dev environment (1)

data-raw/

CRAN release process (1)

cran-comments.md

Research and citation (1)

Zenodo

Show all practices

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

9 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.4.0

Imports (1)

Ternary

LinkingTo (0)

none

Suggests (8)

ape bookdown knitr phangorn Quartet rmarkdown TreeSearch usethis

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Martin R. Smith

Author, Maintainer, Copyright holder

Authors (1)

Martin R. Smith

Author, Maintainer, Copyright holder

Martin R. Smith

Author, Maintainer, Copyright holder

Curtis R. Congreve

James C. Lamsdell

Package Timeline

4 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
1.0.3Latest
2024-02-23 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
1.0.2
2020-01-07 · diff ↗
R
R 3.6.0 released · 2019-04-26
1.0.1
2019-02-07 · diff ↗
1.0.0
2019-02-05
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2019-02-05
Total releases: 4 / 7 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.4.0
Bundled data: 392 KB / 17 files
Download size: 4.0 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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