ClusROC

1.0.3

ROC Analysis in Three-Class Classification Problems for Clustered Data

0packages depend

3.2Kdownloads / year

62.1%test coverage

13/13checks pass

Overview

About

Maintained by Duc-Khanh ToFirst published 2022-05-253 releasesCRAN page ↗GitHub ↗

Statistical methods for ROC surface analysis in three-class classification problems for clustered data and in presence of covariates. In particular, the package allows to obtain covariate-specific point and interval estimation for: (i) true class fractions (TCFs) at fixed pairs of thresholds; (ii) the ROC surface; (iii) the volume under ROC surface (VUS); (iv) the optimal pairs of thresholds. Methods considered in points (i), (ii) and (iv) are proposed and discussed in To et al. (2022) doi:10.1177/09622802221089029. Referring to point (iv), three different selection criteria are implemented: Generalized Youden Index (GYI), Closest to Perfection (CtP) and Maximum Volume (MV). Methods considered in point (iii) are proposed and discussed in Xiong et al. (2018) doi:10.1177/0962280217742539. Visualization tools are also provided. We refer readers to the articles cited above for all details.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("ClusROC", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("toduckhanh/ClusROC")

Development version from toduckhanh/ClusROC. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clusroc

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-ClusROC

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-ClusROC

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.9 min · r-oldrel-windows-x86_64

Code health

Yes

Tests · ratio 0.14

62.1%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 191 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 80%
Documented parameters: 97%
Return-value docs: 100%
References docs: 44%

Downloads

3.2K

CRAN downloads in the past year

Rank #12,300 · ~9/day · ~265/mo

Releases R versions

Daily download trend is not available in this view yet.

27130 days

83390 days

3.2K1 year

Compare downloads with other packages →

Also on470 r2u1 autocran

Repository

GitHub ↗ toduckhanh/clusroc

0Stars

0Forks

0Open issues

0Open PRs

2Releases

238Commits

1Contributors

biomakerbox-cox-transformationmixed-effects-modelsoptimal-thresholdrreciver-operating-characteristics

License GPL-3.0 · 238 commits · Last activity 2022-11-17

Releases over time

2022-05-23 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

1 development-tooling and community-health practice detected across 1 family in the upstream repository

Checks run against github.com/toduckhanh/clusroc on 2026-07-30.

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

12 external dependencies (excludes base and recommended)

Depends (6)

R >= 3.5.0statsutilsgraphicsnlmeRcpp

Imports (9)

rgl ellipse numDeriv ggplot2 ggpubr foreach iteratorsparalleldoParallel

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (3)

Maintainer (1)

Duc-Khanh To

Author, Maintainer · added in 1.0.3

Authors (1)

Duc-Khanh To

Author, Maintainer · added in 1.0.3

Contributors (2)

Gianfranco Adimari

Contributor · added in 1.0.3

Monica Chiogna

Contributor

Listed in earlier versions (2)

Duc-Khanh To ()

no longer listed · 1.0.1 to 1.0.2

with contributions from Gianfranco Adimari

no longer listed · 1.0.1 to 1.0.2

Package Timeline

3 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.3Latest
2025-10-01 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.0.2
2022-11-17 · diff ↗
1.0.1
2022-05-25
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-05-25
Total releases: 3 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 3.5.0
Bundled data: 59 KB / 4 files
Download size: 116 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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