R Observatory: Metrics for CONDOP version 1.0

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

This package was removed from CRAN on 2021-03-25. Its history is shown below.

Reason: email to the maintainer was undeliverable

Details below reflect version 1.0, its last release before removal.

CONDOP

1.0

Condition-Dependent Operon Predictions

0packages depend

–downloads / year

–test coverage

–checks pass

Overview

About

Maintained by Vittorio Fortino1 releasesCRAN page ↗

An implementation of the computational strategy for the comprehensive analysis of condition-dependent operon maps in prokaryotes proposed by Fortino et al. (2014) DOI:10.1186/1471-2105-15-145. It uses RNA-seq transcriptome profiles to improve prokaryotic operon map inference.

Install

R (source archive)

url <- "https://cran.r-project.org/src/contrib/Archive/CONDOP/CONDOP_1.0.tar.gz"
pkgFile <- "CONDOP_1.0.tar.gz"
download.file(url, pkgFile)
install.packages(pkgFile, type = "source", repos = NULL)

This package is no longer on CRAN, so install.packages() cannot fetch it by name. This downloads the last archived source (1.0) and builds it locally. Install its dependencies first, and note that building from source needs the usual compiler toolchain.

Health

CRAN checks

CRAN check results are not tracked yet.

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

12

Dependencies · direct

Documentation

READMENoVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 0%
Documented parameters: 78%
Return-value docs: 100%
References docs: 3%

Downloads

CONDOP Releases R versions

Daily download trend is not available in this view yet.

Compare downloads with other packages →

Dependencies

Declared dependencies

10 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0.1

Imports (12)

statsutilsmclust earth plyr seqinr randomForest rminer GenomicRanges GenomeInfoDb S4Vectors IRanges

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

–indirect (not tracked)

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Other (1)

Vittorio Fortino

Contributor

Package Timeline

1 release. R releases are shown for context.

R
R 4.1.0 released · 2021-05-18
archivedRemoved from CRAN
2021-03-25
email to the maintainer was undeliverable
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
R
R 3.5.0 released · 2018-04-23
R
R 3.4.0 released · 2017-04-21
R
R 3.3.0 released · 2016-05-03
1.0
2016-02-24
R
R 3.2.0 released · 2015-04-16

Package metadata

Total releases: 1
License: GPL-3 OSI
Minimum R: ≥ 3.0.1
Bundled data: 3.7 MB / 2 files
Download size: not tracked yet
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("CONDOP")

Format

Fortino, V. (n.d.). CONDOP: Condition-Dependent Operon Predictions (Version 1.0) [Computer software]. Retrieved August 9, 2026, from https://CRAN.R-project.org/package=CONDOP

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for CONDOP version 1.0 [Data set]. HJJB, LLC. Data release v2026-08-08. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-08, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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