CLME

2.0-13

Constrained Inference for Linear Mixed Effects Models

0packages depend

5.3Kdownloads / year

0.0%test coverage

13/13checks pass

Overview

About

Maintained by Casey M. JelsemaFirst published 2014-10-1711 releasesCRAN page ↗GitHub ↗

Estimation and inference for linear models where some or all of the fixed-effects coefficients are subject to order restrictions. This package uses the robust residual bootstrap methodology for inference, and can handle some structure in the residual variance matrix.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("CLME", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("jelsema/CLME")

Development version from jelsema/CLME. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-clme

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-CLME

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-CLME

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 3.0 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.02

0.0%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-03-10
0 OK · 14 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 65%
Documented parameters: 99%
Return-value docs: 86%
References docs: 11%

Downloads

5.3K

CRAN downloads in the past year

Rank #5,946 · ~14/day · ~439/mo

Releases R versions

Daily download trend is not available in this view yet.

36230 days

1.6K90 days

5.3K1 year

Compare downloads with other packages →

Also on186 r2u29 autocran22 c2d4u

Repository

GitHub ↗ jelsema/clme

2Stars

3Forks

0Open issues

1Open PRs

0Releases

66Commits

2Contributors

66 commits · Last activity 2026-04-06

Stars over time

2024-03-25 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

2 development-tooling and community-health practices detected across 2 families in the upstream repository

Checks run against github.com/jelsema/clme on 2026-07-19.

CRAN release process (1)

cran-comments.md

Lint, format, editor (1)

RStudio project

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

7 external dependencies (excludes base and recommended)

Depends (4)

R >= 4.0.0shiny lme4MASS

Imports (8)

nlmemethodsDT isotone stringrstatsopenxlsxgraphics

LinkingTo (0)

none

Suggests (2)

testthatnnet

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 4,720 (72%)Rd 1,862 (28%)

Code characteristics

Object systems

S339

Cyclomatic complexity: 1.0 median / 49 max
Test cases: 3 / 0.02 per code line

Test coverage

Line coverage

Expression

0.0%

Tests / Examples

0.0% / 40% ex

Functions

61 19 exported

Complexity

5.2 avg / 49 max

Call network

61 nodes / 49 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

61 functions

Function	Cyclo	Coverage
VarCorr exp	1	0%
as.clme exp	19	0%
clme exp	33	0%
clme_em exp	2	0%
clme_em_fixed exp	15	0%
clme_em_mixed exp	17	0%

Datasets

Bundled datasets · 2

Name	Class	Rows × Cols	Also ships in
fibroid	data.frame	240 × 9	–
rat.blood	data.frame	198 × 14	–

People & History

People (2)

Maintainer (1)

Casey M. Jelsema

Author, Maintainer

Authors (2)

Casey M. Jelsema

Author, Maintainer

Shyamal D. Peddada

Author · added in 2.0-4

Package Timeline

11 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
2.0-13Latest
2026-04-06 · current release · diff ↗
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
2.0-12
2020-06-07 · diff ↗
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
2.0-11
2019-02-07 · diff ↗
2.0-10
2018-05-23 · diff ↗
R
R 3.5.0 released · 2018-04-23
2.0-9
2018-02-01 · diff ↗
2.0-8
2017-12-08 · diff ↗
R
R 3.4.0 released · 2017-04-21

Show 8 earlier events

2.0-6
2016-11-08 · diff ↗
R
R 3.3.0 released · 2016-05-03
2.0-4
2015-07-13 · diff ↗
R
R 3.2.0 released · 2015-04-16
2.0-2
2015-01-27 · diff ↗
2.0-1
2014-12-05 · diff ↗
1.0-1
2014-10-17
R
R 3.1.0 released · 2014-04-10

Package metadata

First published: 2014-10-17
Total releases: 11 / 12 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.0.0
Bundled data: 12 KB / 3 files
Download size: 144 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Mixed, Multilevel, and Hierarchical Models in R

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