CDMConnector call graph
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Coverage
42% lines
covr status: test_error
Expression
38.1%
Tests
42.5%
Examples
not measured
Vignettes
not measured
By file
R/cdmFromCohortSet.R
11%
R/generateCohortSet.R
20%
R/utils.R
57%
R/cohdSimilarConcepts.R
63%
R/copyCdmTo.R
68%
R/compute.R
70%
R/cdmSubset.R
71%
R/cdm.R
75%
R/dbSource.R
75%
R/summariseQuantile.R
78%
R/generateConceptCohortSet.R
81%
R/Eunomia.R
82%
Structure
- Functions
- 101
- Exported
- 38
- Compiled
- 0
- Call edges
- 167
Functions ranked by lowest coverage
| Function | Language | Lines | Cyclomatic | Coverage |
|---|---|---|---|---|
| insertTableSpark exp | R | 36 | 8 | 0.0% |
| .build_dose_era_df | R | 86 | 17 | 0.0% |
| .cdm_comment_doc_position | R | 1 | 1 | 0.0% |
| .cdm_comment_get_context | R | 1 | 1 | 0.0% |
| .cdm_comment_insert_text | R | 1 | 1 | 0.0% |
| .cdm_comment_rstudio_available | R | 1 | 1 | 0.0% |
| .collapse_observation_period | R | 12 | 3 | 0.0% |
| .dbWriteTableSpark | R | 32 | 4 | 0.0% |
| bind.cdm_table | R | 26 | 4 | 0.0% |
| caprConceptToDataframe | R | 13 | 1 | 0.0% |
| cohort_collapse | R | 3 | 1 | 0.0% |
| computeAttritionTable | R | 178 | 9 | 0.0% |
| createAtlasCohortCodelistReference | R | 76 | 5 | 0.0% |
| generateCohortSetLocal | R | 79 | 6 | 0.0% |
| cdmFromJson | R | 1861 | 477 | 0.3% |
| generateCohortSet exp | R | 321 | 40 | 0.5% |
| cdmCommentContents exp | R | 86 | 13 | 2.0% |
| cdmFromCohortSet exp | R | 375 | 70 | 4.4% |
| validateCdmTableCase | R | 42 | 6 | 15.2% |
| mapTypes | R | 14 | 4 | 28.6% |