BiostatsUHNplus

1.0.4

Nested Data Summary, Adverse Events and REDCap

0packages depend

4.5Kdownloads / year

6.9%test coverage

13/13checks pass

Overview

About

Maintained by Tyler PittmanFirst published 2023-11-287 releasesCRAN page ↗

Tools and code snippets for summarizing nested data, adverse events and REDCap study information.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BiostatsUHNplus", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-biostatsuhnplus

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BiostatsUHNplus

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BiostatsUHNplus

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 5.3 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.02

6.9%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 2,528 wordsVignettesNopkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 60%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

4.5K

CRAN downloads in the past year

Rank #14,045 · ~12/day · ~376/mo

Releases R versions

Daily download trend is not available in this view yet.

27530 days

78190 days

4.5K1 year

Compare downloads with other packages →

Also on1.5K r2u29 autocran

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.2

Imports (24)

afex coda cowplot dplyr forcats ggh4x ggplot2 ggpubr lifecycle MCMCglmm modeest openxlsxparallelparallelly plyr purrr reportRmd rlang rstatixstatsstringi stringr tibbleutils

LinkingTo (0)

none

Suggests (1)

testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 3,206 (72%)Rd 1,186 (27%)HTML 69 (2%)Other 13 (0%)

Code characteristics

Cyclomatic complexity: 17.0 median / 31 max
Test cases: 3 / 0.02 per code line

Test coverage

Line coverage

Expression

7.2%

Tests / Examples

6.9% / 63% ex

Functions

11 10 exported

Complexity

16.7 avg / 31 max

Call network

11 nodes / 2 edges

Call graph

Open call graph →

Loading call graph…

Lowest coverage

11 functions

Function	Cyclo	Coverage
ae_timeline_plot exp	22	0%
as_numeric_parse exp	4	0%
caterpillar_plot exp	21	0%
dsmb_ccru exp	14	0%
dsmb_ddp exp	24	0%
nice_mcmcglmm exp	5	0%

Datasets

Bundled datasets · 6

Name	Class	Rows × Cols	Also ships in
ae	data.frame	349 × 9	–
demography	tbl_df/tbl/data.frame	12 × 2	–
drug1_admin	tbl_df/tbl/data.frame	12 × 2	–
drug2_admin	tbl_df/tbl/data.frame	12 × 2	–
enrollment	tbl_df/tbl/data.frame	12 × 3	–
ineligibility	tbl_df/tbl/data.frame	11 × 2	–

People & History

People (10)

Maintainer (1)

Tyler Pittman

Maintainer, Author

Authors (10)

Maintainer, Author

Author

Author

Author

Author

Author

Author

Author

Author

Author

Package Timeline

7 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
1.0.4Latest
2026-01-30 · current release · diff ↗
1.0.3
2025-09-10 · diff ↗
R
R 4.5.0 released · 2025-04-11
1.0.2
2025-02-03 · diff ↗
1.0.1
2024-12-06 · diff ↗
0.0.10
2024-05-24 · diff ↗
R
R 4.4.0 released · 2024-04-24
0.0.9
2023-12-04 · diff ↗
0.0.8
2023-11-28
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-11-28
Total releases: 7 / 3 yrs
License: MIT + file LICENSE OSI
Minimum R: ≥ 4.2
Bundled data: 7.5 KB / 6 files
Download size: 1.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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