R Observatory: Metrics for BioRssay version 1.1.0

Balamuta, James Joseph

BioRssay

1.1.0

Analyze Bioassays and Probit Graphs

0packages depend

3Kdownloads / year

–test coverage

11/13checks pass

Overview

About

Maintained by Piyal KarunarathneFirst published 2022-05-262 releasesCRAN page ↗GitHub ↗

A robust framework for analyzing mortality data from bioassays for one or several strains/lines/populations.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BioRssay", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("milesilab/BioRssay")

Development version from milesilab/BioRssay. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-biorssay

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BioRssay

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BioRssay

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

2NOTE11OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-clang
NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.5 min · r-oldrel-macos-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

1

Dependencies · direct

Check history

NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 124 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 40%

Downloads

3K

CRAN downloads in the past year

Rank #14,164 · ~8/day · ~251/mo

Releases R versions

Daily download trend is not available in this view yet.

16830 days

71390 days

3K1 year

Compare downloads with other packages →

Also on386 r2u4 autocran

Repository

GitHub ↗ milesilab/biorssay

3Stars

2Forks

0Open issues

0Open PRs

3Releases

163Commits

4Contributors

probit-analysisbioassay

License AGPL-3.0 · 163 commits · Last activity 2024-11-15

Stars over time

2024-01-05 · 32026-07-07 · 3

Repository practices

Upstream repositoryBeta

6 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/milesilab/biorssay on 2026-08-03.

Continuous integration (1)

GitHub Actions

CRAN release process (1)

cran-comments.md

Docs source (1)

README.Rmd

Research and citation (1)

JOSS paper

Show all practices

Lint, format, editor (1)

RStudio project

Git structural (1)

.gitattributes

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

6 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (1)

colorspace

LinkingTo (0)

none

Suggests (5)

markdown rmarkdown knitr testthat covr

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Piyal Karunarathne

Author, Maintainer

Authors (3)

Piyal Karunarathne

Author, Maintainer

Pierrick Labbé

Author

Pascal Milesi

Author

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
1.1.0Latest
2022-08-09 · current release · diff ↗
1.0.0
2022-05-26
R
R 4.2.0 released · 2022-04-22

Package metadata

First published: 2022-05-26
Total releases: 2 / 4 yrs
License: AGPL (>= 3) OSI
Minimum R: ≥ 3.5
Bundled data: 0.6 KB / 1 file
Download size: 196 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Cite

Cite this package

Start here. This is the citation for the package itself.

citation("BioRssay")

CRAN DOI

https://doi.org/10.32614/CRAN.package.BioRssay

This package ships its own citation metadata, so citation() gives the form its authors ask for. Use that rather than anything derived from DESCRIPTION.

This is the citation for the package. It is not a citation for the R Observatory.

Cite this page

Use this when the claim is about a measurement on this page.

BibTeX

@misc{robservatoryBioRssay,
  author    = {Balamuta, James Joseph},
  title     = {{R} {Observatory}: Metrics for {BioRssay} version 1.1.0},
  year      = {2026},
  publisher = {HJJB, LLC},
  url       = {https://r-observatory.thecoatlessprofessor.com/packages/BioRssay},
  note      = {Data set. Data release v2026-08-05}
}

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BioRssay version 1.1.0 [Data set]. HJJB, LLC. Data release v2026-08-05. https://r-observatory.thecoatlessprofessor.com/packages/BioRssay

RIS

TY  - DATA
AU  - Balamuta, James Joseph
TI  - R Observatory: Metrics for BioRssay version 1.1.0
PY  - 2026
PB  - HJJB, LLC
N1  - Data release v2026-08-05
UR  - https://r-observatory.thecoatlessprofessor.com/packages/BioRssay
ER  -

In prose

These package metrics were obtained from the R Observatory (Balamuta, 2026), data release v2026-08-05, https://r-observatory.thecoatlessprofessor.com/packages/BioRssay.

Bound to data release v2026-08-05, which is what makes the numbers on this page reproducible. See how to cite.

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