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BinaryReplicates

Dealing with Binary Replicates

v1.0.0 · Jan 23, 2026 · GPL (>= 3)

Description

Statistical methods for analyzing binary replicates, which are noisy binary measurements of latent binary states. Provides scoring functions (average, median, likelihood-based, and Bayesian) to estimate the probability that an individual is in the positive state. Includes maximum a posteriori estimation via the EM algorithm and full Bayesian inference via Stan. Supports classification with inconclusive decisions and prevalence estimation.

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CRAN Check Status

3 NOTE
11 OK
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Flavor Status
r-devel-linux-x86_64-debian-clang OK
r-devel-linux-x86_64-debian-gcc OK
r-devel-linux-x86_64-fedora-clang OK
r-devel-linux-x86_64-fedora-gcc OK
r-devel-macos-arm64 OK
r-devel-windows-x86_64 OK
r-oldrel-macos-arm64 NOTE
r-oldrel-macos-x86_64 NOTE
r-oldrel-windows-x86_64 NOTE
r-patched-linux-x86_64 OK
r-release-linux-x86_64 OK
r-release-macos-arm64 OK
r-release-macos-x86_64 OK
r-release-windows-x86_64 OK
Check details (16 non-OK)
OK r-devel-linux-x86_64-debian-clang

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OK r-devel-linux-x86_64-debian-gcc

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OK r-devel-linux-x86_64-fedora-clang

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OK r-devel-linux-x86_64-fedora-gcc

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OK r-devel-macos-arm64

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OK r-devel-windows-x86_64

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NOTE r-oldrel-macos-arm64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 37.1Mb
  sub-directories of 1Mb or more:
    libs  36.8Mb
NOTE r-oldrel-macos-x86_64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 38.5Mb
  sub-directories of 1Mb or more:
    libs  38.1Mb
NOTE r-oldrel-windows-x86_64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.
OK r-patched-linux-x86_64

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OK r-release-linux-x86_64

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OK r-release-macos-arm64

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OK r-release-macos-x86_64

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OK r-release-windows-x86_64

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Check History

NOTE 11 OK · 3 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE Mar 9, 2026
NOTE r-oldrel-macos-arm64

installed package size

  installed size is 37.1Mb
  sub-directories of 1Mb or more:
    libs  36.8Mb
NOTE r-oldrel-macos-x86_64

installed package size

  installed size is 38.5Mb
  sub-directories of 1Mb or more:
    libs  38.1Mb
NOTE r-oldrel-windows-x86_64

for GNU extensions in Makefiles

GNU make is a SystemRequirements.

Dependency Network

Dependencies Reverse dependencies Rcpp RcppParallel rstan (>= 2.18.1) rstantools dplyr magrittr (>= 1.5) BinaryReplicates

Version History

new 1.0.0 Mar 9, 2026