Bernadette

1.1.6

Bayesian Inference and Model Selection for Stochastic Epidemics

0packages depend

3.3Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Lampros BouranisFirst published 2023-05-186 releasesCRAN page ↗GitHub ↗

Bayesian analysis for stochastic extensions of non-linear dynamic systems using advanced computational algorithms. Described in Bouranis, L., Demiris, N., Kalogeropoulos, K., and Ntzoufras, I. (2022) doi:10.48550/arXiv.2211.15229.

Install

R (CRAN)pak (dev)Ubuntu (r2u)openSUSE (OBS)

install.packages("Bernadette", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("bernadette-eu/Bernadette")

Development version from bernadette-eu/Bernadette. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bernadette

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-Bernadette

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.8 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-04-25
12 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-04-22
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
11 OK · 2 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
NOTE2026-03-10
12 OK · 2 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 45%
Documented parameters: 99%
Return-value docs: 100%
References docs: 52%

Downloads

3.3K

CRAN downloads in the past year

Rank #10,571 · ~9/day · ~272/mo

Releases R versions

Daily download trend is not available in this view yet.

41530 days

99690 days

3.3K1 year

Compare downloads with other packages →

Also on457 r2u54 autocran19 c2d4u

Repository

GitHub ↗ bernadette-eu/bernadette

2Stars

3Forks

1Open issues

0Open PRs

2Releases

229Commits

6Contributors

License GPL-3.0 · 229 commits · Last activity 2025-02-28

Stars over time

2024-10-23 · 22026-07-07 · 2

Repository practices

Upstream repositoryBeta

8 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/bernadette-eu/bernadette on 2026-07-19.

Continuous integration (2)

GitHub ActionsTravis CI

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (1)

RStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

19 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.0.2

Imports (12)

ggplot2gridgridExtra magrittrmethodsRcpp (>= 1.0.8.3)RcppParallel rstantools rstan scalesstatsutils

LinkingTo (6)

BH Rcpp RcppEigen (>= 0.3.3.9.1)RcppParallel rstan StanHeaders

Suggests (5)

knitr rmarkdown roxygen2 StanHeaders testthat

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (2)

Maintainer (1)

Lampros Bouranis

Author, Maintainer, Copyright holder

Authors (1)

Lampros Bouranis

Author, Maintainer, Copyright holder

Lampros Bouranis

Author, Maintainer, Copyright holder

Funders (1)

European Union

Funder

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
1.1.6Latest
2025-02-28 · current release · diff ↗
R
R 4.4.0 released · 2024-04-24
1.1.5
2024-01-12 · diff ↗
1.1.4
2023-06-06 · diff ↗
1.1.3
2023-05-30 · diff ↗
1.1.2
2023-05-25 · diff ↗
1.1.1
2023-05-18
R
R 4.3.0 released · 2023-04-21

Package metadata

First published: 2023-05-18
Total releases: 6 / 3 yrs
License: GPL (>= 3) OSI
Minimum R: ≥ 3.0.2
Bundled data: 162 KB / 4 files
Download size: 227 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Epidemiology

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