BayesERtools

0.2.7

Bayesian Exposure-Response Analysis Tools

0packages depend

7.9Kdownloads / year

97.4%test coverage

13/13checks pass

Overview

About

Maintained by Kenta YoshidaFirst published 2025-02-108 releasesCRAN page ↗

Suite of tools that facilitate exposure-response analysis using Bayesian methods. The package provides a streamlined workflow for fitting types of models that are commonly used in exposure-response analysis - linear and Emax for continuous endpoints, logistic linear and logistic Emax for binary endpoints, as well as performing simulation and visualization. Learn more about the workflow at https://genentech.github.io/BayesERbook/.

Install

R (CRAN)Ubuntu (r2u)openSUSE (OBS)

install.packages("BayesERtools", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bayesertools

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BayesERtools

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 11.6 min · r-devel-linux-x86_64-fedora-clang

Code health

Yes

Tests · ratio 0.37

97.4%

Coverage · measured lines

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-07-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-27
10 OK · 0 NOTE · 0 WARNING · 3 ERROR · 0 FAILURE
OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 593 wordsVignettesYes · dynamicpkgdown siteNoNEWSYes · 100% structuredCode of conductNoContributing guideNo

Examples that run: 84%
Documented parameters: 93%
Return-value docs: 100%
References docs: 0%

Downloads

7.9K

CRAN downloads in the past year

Rank #4,724 · ~22/day · ~661/mo

Releases R versions

Daily download trend is not available in this view yet.

53930 days

1.9K90 days

7.9K1 year

Compare downloads with other packages →

Also on203 r2u29 autocran

Repository

GitHub ↗ genentech/bayesertools

7Stars

4Forks

4Open issues

0Open PRs

7Releases

125Commits

3Contributors

125 commits · Last activity 2026-06-30 · 0% stars, 30d

Stars over time

2025-07-09 · 62026-07-07 · 7

Repository practices

Upstream repositoryBeta

8 development-tooling and community-health practices detected across 6 families in the upstream repository

Checks run against github.com/genentech/bayesertools on 2026-07-19.

Continuous integration (1)

GitHub Actions

Reproducibility and dev environment (1)

data-raw/

CRAN release process (2)

cran-comments.mdCRAN-SUBMISSION

Docs source (1)

README.Rmd

Show all practices

Lint, format, editor (2)

lintrRStudio project

Coverage (1)

Codecov

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

29 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1

Imports (13)

dplyr tidyr purrr ggplot2 gt cli rlang rstanarm rstanemax rstantools loo ggdist posterior

LinkingTo (0)

none

Suggests (16)

testthat covr knitr rmarkdown rstan htmltools digest ggforce xgxr scales readr bayestestR patchwork projpred rsample yardstick

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (4)

Maintainer (1)

Kenta Yoshida

Author, Maintainer

Authors (3)

Kenta Yoshida

Author, Maintainer

François Mercier

Author

Danielle Navarro

Author · added in 0.2.3

Genentech, Inc.

Package Timeline

8 releases. Pick two to compare their code metrics. R releases are shown for context.

0.2.7Latest
2026-06-30 · current release · diff ↗
0.2.6
2026-06-13 · diff ↗
R
R 4.6.0 released · 2026-04-24
0.2.5
2026-04-23 · diff ↗
0.2.4
2025-10-02 · diff ↗
0.2.3
2025-06-16 · diff ↗
0.2.2
2025-06-06 · diff ↗
R
R 4.5.0 released · 2025-04-11
0.2.1
2025-02-12 · diff ↗
0.2.0
2025-02-10
R
R 4.4.0 released · 2024-04-24

Package metadata

First published: 2025-02-10
Total releases: 8 / 1 yrs
License: Apache License 2.0 OSI
Minimum R: ≥ 4.1
Bundled data: 120 KB / 5 files
Download size: 1.3 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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