BSTFA

0.1.0

Bayesian Spatio-Temporal Factor Analysis Model

0packages depend

2.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Candace BerrettFirst published 2025-08-281 releasesCRAN page ↗

Implements Bayesian spatio-temporal factor analysis models for multivariate data observed across space and time. The package provides tools for model fitting via Markov chain Monte Carlo (MCMC), spatial and temporal interpolation, and visualization of latent factors and loadings to support inference and exploration of underlying spatio-temporal patterns. Designed for use in environmental, ecological, or public health applications, with support for posterior prediction and uncertainty quantification. Includes functions such as BSTFA() for model fitting and plot_factor() to visualize the latent processes. Functions are based on and extended from methods described in Berrett, et al. (2020) doi:10.1002/env.2609.

Install

R (CRAN)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BSTFA", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bstfa

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BSTFA

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BSTFA

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

13OK

Slowest check: 7.1 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

OK2026-06-09
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-06-08
12 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-22
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-18
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-04-08
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-07
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMENoVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 91%
Return-value docs: 100%
References docs: 0%

Downloads

2.2K

CRAN downloads in the past year

Rank #15,175 · ~6/day · ~187/mo

Releases R versions

Daily download trend is not available in this view yet.

25830 days

73890 days

2.2K1 year

Compare downloads with other packages →

Also on415 r2u53 autocran

Dependencies

Declared dependencies

22 external dependencies (excludes base and recommended)

Depends (1)

R >= 3.5

Imports (17)

MASSRColorBrewer ggplot2 ggpubrmgcvMCMCpack coda npreg matrixcalc scatterplot3d sf Rcpp lubridateMatrixstatsmethodsRcppArmadillo

LinkingTo (2)

Rcpp RcppArmadillo

Suggests (9)

knitr rmarkdownutilsdevtools kableExtra bookdown magick maps loo

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Code Composition

R 3,504 (44%)Other 2,299 (29%)Rd 1,078 (13%)Vignettes 878 (11%)C++ 239 (3%)CSS 7 (0%)

Code characteristics

Cyclomatic complexity: 7.0 median / 83 max

Test coverage

Line coverage

–

Expression

–

Tests / Examples

–

Functions

32 18 exported

Complexity

20.6 avg / 83 max

Call network

32 nodes / 19 edges

Call graph

Open call graph →

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Lowest coverage

Per-function coverage is not measured for this package yet.

People & History

People (2)

Maintainer (1)

Candace Berrett

Author, Maintainer

Authors (2)

Candace Berrett

Author, Maintainer

Adam Simpson

Author

Package Timeline

1 release. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
0.1.0Latest
2026-03-10 · current release
R
R 4.5.0 released · 2025-04-11

Package metadata

First published: 2025-08-28
Total releases: 1 / 1 yrs
License: GPL (>= 2) OSI
Minimum R: ≥ 3.5
Bundled data: 1.7 MB / 2 files
Download size: 3.6 MB
Installed size: not tracked yet
With dependencies: not tracked yet

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