BBI

0.3.0

Benthic Biotic Indices Calculation from Composition Data

0packages depend

2.7Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Tristan CordierFirst published 2018-05-182 releasesCRAN page ↗GitHub ↗

Set of functions to calculate Benthic Biotic Indices from composition data, obtained whether from morphotaxonomic inventories or sequencing data. Based on reference ecological weights publicly available for a set of commonly used marine biotic indices, such as AMBI (A Marine Biotic Index, Borja et al., 2000) doi:10.1016/S0025-326X(00)00061-8 NSI (Norwegian Sensitivity Index) and ISI (Indicator Species Index) (Rygg 2013, <ISBN:978-82-577-6210-0>). It provides the ecological quality status of the samples based on each BBI as well as the normalized Ecological Quality Ratio.

Install

R (CRAN)pak (dev)Ubuntu (r2u)Fedora (COPR)openSUSE (OBS)

install.packages("BBI", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

if (!requireNamespace("pak", quietly = TRUE))
  install.packages("pak", repos = "https://cloud.r-project.org/")
pak::pak("trtcrd/BBI")

Development version from trtcrd/BBI. Installs pak first if it is not already available.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-bbi

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

# enable the iucar/cran COPR if it is not already present, then install
ls /etc/yum.repos.d/*iucar*cran*.repo >/dev/null 2>&1 \
  || sudo dnf copr enable -y iucar/cran
sudo dnf install -y R-CRAN-BBI

RPMs from the iucar/cran COPR, rebuilt from CRAN.

For install.packages() integration in R, also: sudo dnf install R-CoprManager

# add the autoCRAN OBS repo (Tumbleweed) if it is missing, then install
zypper -q lr | grep -qi autoCRAN \
  || sudo zypper addrepo https://download.opensuse.org/repositories/devel:/languages:/R:/autoCRAN/openSUSE_Tumbleweed/devel:languages:R:autoCRAN.repo
sudo zypper install -y R-BBI

RPMs auto-built from CRAN on openSUSE OBS (Tumbleweed).

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 1.7 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 298 wordsVignettesNopkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 25%

Downloads

2.7K

CRAN downloads in the past year

Rank #15,743 · ~7/day · ~224/mo

Releases R versions

Daily download trend is not available in this view yet.

17630 days

67090 days

2.7K1 year

Compare downloads with other packages →

Also on105 r2u5 autocran

Repository

GitHub ↗ trtcrd/bbi

1Stars

1Forks

0Open issues

1Open PRs

4Releases

43Commits

2Contributors

License AGPL-3.0 · 43 commits · Last activity 2026-02-25 · 0% stars, 30d

Stars over time

2018-07-10 · 12026-07-07 · 1

Repository practices

Upstream repositoryBeta

Checks run against github.com/trtcrd/bbi on 2026-08-02.

No development-tooling practices detected in the upstream repository.

How this is detected·Detection ruleset v1 (2026-07-18)

Dependencies

Declared dependencies

1 external dependency (excludes base and recommended)

Depends (1)

vegan

Imports (0)

none

LinkingTo (0)

none

Suggests (0)

none

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

Datasets

People & History

People (1)

Maintainer (1)

Tristan Cordier

Author, Maintainer

Authors (1)

Tristan Cordier

Author, Maintainer

Package Timeline

2 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
R
R 4.3.0 released · 2023-04-21
R
R 4.2.0 released · 2022-04-22
R
R 4.1.0 released · 2021-05-18
R
R 4.0.0 released · 2020-04-24
R
R 3.6.0 released · 2019-04-26
0.3.0Latest
2018-10-17 · current release · diff ↗
0.2.0
2018-05-18
R
R 3.5.0 released · 2018-04-23

Package metadata

First published: 2018-05-18
Total releases: 2 / 8 yrs
License: AGPL-3 | file LICENSE OSI
Bundled data: 2.1 KB / 2 files
Download size: 168 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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