R Observatory: Metrics for BASiNETEntropy version 0.99.6

Balamuta, James Joseph

doi:10.5281/zenodo.21843040

BASiNETEntropy

0.99.6

Classification of RNA Sequences using Complex Network and Information Theory

0packages depend

3.2Kdownloads / year

–test coverage

13/13checks pass

Overview

About

Maintained by Fabricio Martins LopesFirst published 2022-01-126 releasesCRAN page ↗

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of maximum entropy for the purpose of making a classification between the classes of the sequences. There are two data present in the 'BASiNET' package, "mRNA", and "ncRNA" with 10 sequences. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) doi:10.1186/1471-2105-15-311, these sequences are used to run examples.

Install

R (CRAN)Ubuntu (r2u)

install.packages("BASiNETEntropy", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-basinetentropy

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

13OK

Slowest check: 2.8 min · r-oldrel-windows-x86_64

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

3

Dependencies · direct

Check history

OK2026-08-05
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-09
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-24
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Show 2 earlier snapshots

ERROR2026-04-23
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE
OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 508 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3.2K

CRAN downloads in the past year

Rank #12,358 · ~9/day · ~264/mo

Releases R versions

Daily download trend is not available in this view yet.

25130 days

80690 days

3.2K1 year

Compare downloads with other packages →

Also on136 r2u

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (3)

igraph Biostrings randomForest

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Fabricio Martins Lopes

Author, Maintainer

Authors (3)

Fabricio Martins Lopes

Author, Maintainer

Murilo Montanini Breve

Author

Matheus Henrique Pimenta-Zanon

Author

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.99.6Latest
2023-08-16 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
0.99.5
2022-08-26 · diff ↗
0.99.4
2022-07-07 · diff ↗
0.99.3
2022-07-06 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.99.2
2022-03-23 · diff ↗
0.99.1
2022-01-12
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-01-12
Total releases: 6 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.0
Download size: 137 KB
Installed size: not tracked yet
With dependencies: not tracked yet

Appears in task views

Network Analysis

Cite

Cite this package

Run in R for the authors' preferred citation:

citation("BASiNETEntropy")

Format

Lopes, F. M., Breve, M. M., & Pimenta-Zanon, M. H. (2023). BASiNETEntropy: Classification of RNA Sequences using Complex Network and Information Theory (Version 0.99.6) [Computer software]. https://doi.org/10.32614/CRAN.package.BASiNETEntropy

This is what citation() produces when a package has no citation file of its own. If it prints something else, use that.

Cite the R Observatory

For a number measured here: a download total, a coverage figure, an archival date.

Format

APA

Balamuta, J. J. (2026). R Observatory: Metrics for BASiNETEntropy version 0.99.6 [Data set]. HJJB, LLC. Data release v2026-08-08. https://doi.org/10.5281/zenodo.21843040

From data release v2026-08-08, which the citation names so these numbers can be found later. More on citing and the projects behind them.

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