BASiNETEntropy

0.99.6

Classification of RNA Sequences using Complex Network and Information Theory

0packages depend

3.2Kdownloads / year

–test coverage

12/13checks pass

Overview

About

Maintained by Fabricio Martins LopesFirst published 2022-01-126 releasesCRAN page ↗

It makes the creation of networks from sequences of RNA, with this is done the abstraction of characteristics of these networks with a methodology of maximum entropy for the purpose of making a classification between the classes of the sequences. There are two data present in the 'BASiNET' package, "mRNA", and "ncRNA" with 10 sequences. These sequences were taken from the data set used in the article (LI, Aimin; ZHANG, Junying; ZHOU, Zhongyin, 2014) doi:10.1186/1471-2105-15-311, these sequences are used to run examples.

Install

R (CRAN)Ubuntu (r2u)

install.packages("BASiNETEntropy", repos = "https://cloud.r-project.org/")

Installs the current CRAN release. Prebuilt binaries on Windows and macOS.

Release

# enable cranapt (r2u) if it is not already set up, then install
grep -rqs r2u.stat.illinois.edu /etc/apt/sources.list /etc/apt/sources.list.d/ \
  || curl -fsSL https://raw.githubusercontent.com/eddelbuettel/r2u/master/inst/scripts/add_cranapt_noble.sh | sudo bash
sudo apt install -y r-cran-basinetentropy

Fast Ubuntu binaries via r2u (no compilation). The cranapt setup runs once and is skipped when it is already enabled.

bspm (used by r2u) also needs make: sudo apt install make

Health

CRAN checks

1NOTE12OK

Failing flavors

NOTE r-devel-linux-x86_64-debian-gcc

Slowest check: 3.5 min · r-devel-linux-x86_64-fedora-clang

Code health

None

Tests · ratio 0.00

not tracked

Coverage

100%

Documentation · exports

Dependencies · direct

Check history

NOTE2026-08-01
12 OK · 1 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
OK2026-05-10
13 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
WARNING2026-05-09
12 OK · 0 NOTE · 1 WARNING · 0 ERROR · 0 FAILURE
OK2026-04-24
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE
ERROR2026-04-23
13 OK · 0 NOTE · 0 WARNING · 1 ERROR · 0 FAILURE

Show 1 earlier snapshots

OK2026-03-10
14 OK · 0 NOTE · 0 WARNING · 0 ERROR · 0 FAILURE

Documentation

READMEYes · 508 wordsVignettesYes · dynamicpkgdown siteNoNEWSNoCode of conductNoContributing guideNo

Examples that run: 100%
Documented parameters: 100%
Return-value docs: 100%
References docs: 0%

Downloads

3.2K

CRAN downloads in the past year

Rank #12,738 · ~9/day · ~267/mo

Releases R versions

Daily download trend is not available in this view yet.

24830 days

79090 days

3.2K1 year

Compare downloads with other packages →

Also on136 r2u

Dependencies

Declared dependencies

5 external dependencies (excludes base and recommended)

Depends (1)

R >= 4.1.0

Imports (3)

igraph Biostrings randomForest

LinkingTo (0)

none

Suggests (2)

knitr rmarkdown

Enhances (0)

none

Dependency license breakdown →

Reverse dependencies

0direct

0indirect

Nothing depends on this yet.

Code & Tests

People & History

People (3)

Maintainer (1)

Fabricio Martins Lopes

Author, Maintainer

Authors (3)

Fabricio Martins Lopes

Author, Maintainer

Murilo Montanini Breve

Author

Matheus Henrique Pimenta-Zanon

Author

Package Timeline

6 releases. Pick two to compare their code metrics. R releases are shown for context.

R
R 4.6.0 released · 2026-04-24
R
R 4.5.0 released · 2025-04-11
R
R 4.4.0 released · 2024-04-24
0.99.6Latest
2023-08-16 · current release · diff ↗
R
R 4.3.0 released · 2023-04-21
0.99.5
2022-08-26 · diff ↗
0.99.4
2022-07-07 · diff ↗
0.99.3
2022-07-06 · diff ↗
R
R 4.2.0 released · 2022-04-22
0.99.2
2022-03-23 · diff ↗
0.99.1
2022-01-12
R
R 4.1.0 released · 2021-05-18

Package metadata

First published: 2022-01-12
Total releases: 6 / 4 yrs
License: GPL-3 OSI
Minimum R: ≥ 4.1.0
Download size: 137 KB
Installed size: not tracked yet
With dependencies: not tracked yet

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