Bioconductor Packages

A data package

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

Attribute-Weighted Aggregation Data

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Data and Files for the AssessORF Package

Illumina EPIC data on BeadSorted child saliva cells

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Carbon Tetrachloride (CCl4) treated hepatocytes

A Package for CLL Gene Expression Data

Methylation data of primary CLL samples in PACE project

Annotations for City of Hope CpG Island Analysis Pipeline

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

COSMIC.67

CRC cell line dataset

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Chimp and human brain data package

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

DNA methylation-based machine learning models

Data accompanying the DAPAR and Prostar packages

Diffuse large B-cell lymphoma expression data

Data Package for DMRcate

Example DNAm Data for DMRsegal

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Orchestrating Blood Radiation Transcriptomic Data

Supplementary data package for Dona et al. (2013) containing example images and tables

Drug versus Disease Data

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Data for the EpiMix package

EpipwR.data: Reference data for EpipwR

CAGE data from FANTOM3 and FANTOM4 projects

Human Functional Interactions (FIs) for splineTimeR package

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

Illumina HumanMethylation data on sorted blood cell populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526