Bioconductor Packages

Supporting data for package OMICsPCA

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Data package for phylogenetic profile analysis using PhyloProfile tool

Programmatic access to ProteinGym datasets in R/Bioconductor

P. tricornutum HPLC-ESI-MS Lipid Data from van Creveld et al. (2015)

An RRBS data set with 12 samples and 10,000 simulated DMRs

Companion data package for the ReactomeGSA package

Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication

Example SpatialFeatureExperiment datasets

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

An example dataset for use with the SVM2CRM package

Integrating Multi-modal Single Cell Experiment datasets

Collection of spatial omics datasets

Data for the TCGAbiolinksGUI package

Experiment data for the TENET package

Single cell dataset from 10x in BUS format

Data from the 10X 1.3 Million Brain Cell Study

PBMC data from 10X Genomics

Visium spatial gene expression data by 10X Genomics

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

Data for the VariantTools tutorial

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

Example experimental microarray data set for the "biotmle" R package

Experimental dataset from the rat BodyMap project

A harmonized data resource and software for enrichment analysis of microbial physiologies

Data for Combination Connectivity Mapping (ccmap) Package

Index of Reference Cell Type Datasets

ExperimentHub data for the cfTools package

Companion package to chipenrich

External data sets for clustifyr in ExperimentHub

Data used in the vignette of the cnvGSA package

Bladder Cancer Gene Expression Analysis

Curated breast cancer gene expression data with survival and treatment information

Colorectal Cancer Gene Expression Analysis

Curated Metagenomic Data of the Human Microbiome

Curated Prostate Cancer Data

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Cancer Dependency Map Data Package

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

An ExperimentHub Package for data sets with an Epithelial to Mesenchymal Transition (EMT)

The ewceData package provides reference data required for ewce

Furrow Segmentation

RNA-seq data with different levels of gDNA contamination

Example data for the GPA package (Genetic analysis incorporating Pleiotropy and Annotation)

Synthetic Expression Data for Gene Regulatory Network Inference

Sample data - Hapmap SNP 5.0 Affymetrix

Sample data - Hapmap SNP 6.0 Affymetrix

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not