Bioconductor Packages

Supporting datasets for SBGNview package

Sequence data from chromosome 4 of a small-cell lung tumor

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Integrating Multi-modal Single Cell Experiment datasets

An example cancer whole genome sequencing data for the SomatiCA package

Somatic Cancer Alterations

Collection of spatial omics datasets

Annotated spatial transcriptomics datasets from 10x Xenium, NanoString CosMx and BGI STOmics.

The Cancer Genome Atlas Illumina 450k methylation example data

Data for TCGA Workflow

TCGA CRC 450 mRNA dataset

TCGA CRC 450 miRNA dataset

Experiment data for the TENET package

Visium spatial gene expression data by 10X Genomics

A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata

A Collection of DNA Methylation Datasets for Human Tumour Samples and Matching Normal Samples

Vectra Polaris and Vectra 3 multiplex single-cell imaging data

Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

Normal colon and cancer preprocessed affy data for antiProfile building.

ARACNe-inferred gene networks from TCGA tumor datasets

Human B-cell transcriptional interactome and normal human B-cell expression data

Bladder gene expression data illustrating batch effects

Gene expression dataset published by Schmidt et al. [2008] (MAINZ).

Genexpression dataset published by van't Veer et al. [2002] and van de Vijver et al. [2002] (NKI).

Gene expression dataset published by Desmedt et al. [2007] (TRANSBIG).

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Example whole genome bisulfite data for the bsseq package

A harmonized data resource and software for enrichment analysis of microbial physiologies

Development and validation of diagnostic tests from high-dimensional molecular data: Datasets

ExperimentHub data for the cfTools package

Companion package to chipenrich

exprSet for Alon et al. (1999) colon cancer data

Bladder Cancer Gene Expression Analysis

Curated breast cancer gene expression data with survival and treatment information

Colorectal Cancer Gene Expression Analysis

Curated Metagenomic Data of the Human Microbiome

Clinically Annotated Data for the Ovarian Cancer Transcriptome

Curated Prostate Cancer Data

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Cancer Dependency Map Data Package

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Data sets for FABIA (Factor Analysis for Bicluster Acquisition)

Furrow Segmentation

Auxillary data for gage package

exprSets for golub leukemia data

Example data for the h5vc package

Sample data - Hapmap 100K HIND Affymetrix