Bioconductor Packages

Attribute-Weighted Aggregation Data

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

Data and Files for the AssessORF Package

Illumina EPIC data on BeadSorted child saliva cells

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Carbon Tetrachloride (CCl4) treated hepatocytes

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

COSMIC.67

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Chimp and human brain data package

Helper files for CopywriteR

DNA methylation-based machine learning models

Data accompanying the DAPAR and Prostar packages

Data Package for DMRcate

Example DNAm Data for DMRsegal

Supplementary data package for Dona et al. (2013) containing example images and tables

Data for the EpiMix package

EpipwR.data: Reference data for EpipwR

CAGE data from FANTOM3 and FANTOM4 projects

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Illumina HumanMethylation data on sorted blood cell populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

GEO accession data GSE62944 as a SummarizedExperiment

Data employed in the vignette of the GSVA package

Reference data for GenomicDistributions package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

16S rRNA Sequencing Data from the Human Microbiome Project

16s rRNA sequencing data from the Human Microbiome Project 2

Processed Harmonized TCGA Data of Five Selected Cancer Types

HiBED

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Cell-to-cell expression variability followed by signal reinforcement progressively segregates early mouse lineages

Long-read RNA-seq gene count data from human retinal organoids

Reproduce figures in IHW paper

Kinase PWMs based on data published by Johnson et al. 2023 and Yaron-Barir et al. 2024

LegATo: Longitudinal mEtaGenomic Analysis Toolkit

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

Reads from Two Lung Cancer Cell Lines

M3Drop Example Data