Bioconductor Packages

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

100+ Curated Breast Cancer Gene Expression Data sets

Datasets and test data files for the BentoBox package

R-side access to BioPlex protein-protein interaction data

Annotations for City of Hope CpG Island Analysis Pipeline

Genomic coordinates of CTCF binding sites, with orientation

ChIC package data

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Chimp and human brain data package

Helper files for CopywriteR

Orchestrating Blood Radiation Transcriptomic Data

Drug versus Disease Data

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Download datasets from EMBL-EBI Expression Atlas

Human Functional Interactions (FIs) for splineTimeR package

Various data sets for use with the FunciSNP package

all 90 hapmap CEU samples, 47K expression, 4mm SNP

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Data used in the examples and vignettes of the GWASTools package

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects

ITALICSData

Example Junction Count data for use with JunctionSeq

Disease Datasets from GEO

KEGG Disease Datasets from GEO

Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)

A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.

LymphoSeq annotation databases

M3Drop Example Data

Experimental Data Package: MAQCsubset

MIGSA vignette data

Example ChIP-Seq data for the MMDiff package

Transcriptomic Breast Cancer Datasets

Transcriptomic Ovarian Cancer Datasets

Transcriptomic Pancreatic Cancer Datasets

Motif Identification and Validation

Data for the NCIgraph software package

Data required for getting the gene set scores with NetActivity package

Supporting data for package OMICsPCA

Ob/ob Mice Data on Normal and High Fat Diet

expression and copy number data on clear cell renal carcinoma samples

Data package with transcript expression obtained with kallisto from pasilla knock-down RNA-Seq data from Brooks et al.

Experimental data for the PathNet package

SELDI-TOF data of Breast cancer samples

test data for RIPSeeker