Bioconductor Packages

A data package

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

WGSCS Data for Demonstration Purposes

100+ Curated Breast Cancer Gene Expression Data sets

Datasets and test data files for the BentoBox package

R-side access to BioPlex protein-protein interaction data

BioC Workflow about publishing a Bioc Workflow

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

A step-by-step guide to analyzing CAGE data using R/Bioconductor

A Package for CLL Gene Expression Data

Methylation data of primary CLL samples in PACE project

Annotations for City of Hope CpG Island Analysis Pipeline

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

COSMIC.67

CRC cell line dataset

ChIC package data

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Chimp and human brain data package

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

DNA methylation-based machine learning models

Diffuse large B-cell lymphoma expression data

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Orchestrating Blood Radiation Transcriptomic Data

Drug versus Disease Data

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Download datasets from EMBL-EBI Expression Atlas

Human Functional Interactions (FIs) for splineTimeR package

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

Various data sets for use with the FunciSNP package

all 90 hapmap CEU samples, 47K expression, 4mm SNP

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package

GeoMx Digital Spatial Profiler (DSP) data analysis workflows

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

T cell line infections with HIV-1 LAI (BRU)

Head and Neck Squamous Carcinoma scRNA-Seq dataset

Processed Harmonized TCGA Data of Five Selected Cancer Types

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

HiTIMED

GEO accession GSE64985 and ArrayExpress accession E-MTAB-62 as ExpressionSet objects