Bioconductor Packages

Gene expression dataset published by Sotiriou et al. [2007] (UNT).

Gene expression dataset published by Miller et al. [2005] (UPP).

Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX).

Connectivity Map (version 2) Data

A Curated Microarrays Dataset of MDI-induced Differentiated Adipocytes (3T3-L1) Under Genetic and Pharmacological Perturbations

A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

A Curated RNA-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)

Curated breast cancer gene expression data with survival and treatment information

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

Cancer Dependency Map Data Package

Example data for the dyebias package, which implements the GASSCO method.

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

Illumina DASL example microarray data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Auxillary data for gage package

Experimental data for showing functionalities of the genomation package

Synthetic Expression Data for Gene Regulatory Network Inference

Sample data - Hapmap 100K HIND Affymetrix

Sample data - Hapmap 100K XBA Affymetrix

Sample data - Hapmap 500K NSP Affymetrix

Sample data - Hapmap 500K STY Affymetrix

Sample data - Hapmap SNP 5.0 Affymetrix

Sample data - Hapmap SNP 6.0 Affymetrix

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

CellScore Standard Cell Types Expression Dataset [hgu133plus2]

DKFZ kidney package

Leukemia's microarray gene expression data (expressionSet).

Meta cohort survival data

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Multi-sample multi-group scRNA-seq data

ExperimentHub datasets for the nullranges package

Datasets and test data files for the plotgardener package

rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

Normalized gene expression dataset published by Wollbold et al. [2009] (WOLLBOLD).

Pre-processed data for use with the sampleClassifier package

A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata

Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets

Spatial allelic expression counts for fly cross embryo

Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)

systemPipeRdata: Workflow templates and sample data

Import, process and analysis of ToF-SIMS imaging data

Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data