Bioconductor Packages

4,656 packages in the Bioconductor catalogue.

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ChipManufacturer404 ChipName197 CustomArray2 CustomCDF0 CustomDBSchema10 FunctionalAnnotation30 Organism672 PackageType655 SequenceAnnotation5 ExonArray12 Technology1,611 Infrastructure615

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Showing 1–50 of 439 packages

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Package	Category	Version	First Release	Last Release	Status
AHCytoBands Bioc CytoBands for AnnotationHub	annotation	0.99.1	3.15	3.23	current
AHEnsDbs Bioc EnsDbs for AnnotationHub	annotation	1.7.0	3.15	3.23	current
AHLRBaseDbs Bioc LRBaseDbs for AnnotationHub	annotation	1.8.0	3.15	3.23	current
AHMeSHDbs Bioc MeSHDbs for AnnotationHub	annotation	1.8.0	3.15	3.23	current
AHPathbankDbs Bioc Metabolites and proteins linked to PathBank pathways (for AnnotationHub)	annotation	0.99.5	3.15	3.23	current
AHWikipathwaysDbs Bioc Metabolites linked to WikiPathways pathways (for AnnotationHub)	annotation	0.99.4	3.15	3.23	current
CTCF Bioc Genomic coordinates of CTCF binding sites, with orientation	annotation	0.99.14	3.15	3.23	current
DO.db Bioc A set of annotation maps describing the entire Disease Ontology	annotation	2.9		3.23	current
EPICv2manifest Bioc Illumina Infinium MethylationEPIC v2.0 extended manifest from Peters et al. 2024	annotation	0.99.7	3.19	3.23	current
EuPathDB Bioc Provides access to pathogen annotation resources available on EuPathDB databases	annotation	1.0.1	3.15	3.23	current
GGHumanMethCancerPanelv1.db Bioc Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1)	annotation	1.4.1		3.23	current
GO.db Bioc A set of annotation maps describing the entire Gene Ontology	annotation	3.23.1		3.23	current
HDO.db Bioc A set of annotation maps describing the entire Human Disease Ontology	annotation	1.0.0		3.23	current
HPO.db Bioc A set of annotation maps describing the entire Human Phenotype Ontology	annotation	0.99.2	3.18	3.23	current
HsAgilentDesign026652.db Bioc Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652)	annotation	3.2.3		3.23	current
Hspec Bioc Hspec	annotation	0.99.1		3.23	current
HuExExonProbesetLocation Bioc Probe sequence data for microarrays of type HuEx	annotation	1.15.0		3.23	current
HuExExonProbesetLocationHg18 Bioc Exon-level probeset chromosome location for microarrays of type HuEx	annotation	0.0.2		3.23	current
HuExExonProbesetLocationHg19 Bioc Exon-level probeset chromosome location for microarrays of type HuEx	annotation	0.0.3		3.23	current
IlluminaHumanMethylation27k.db Bioc Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k)	annotation	1.4.8		3.23	current
IlluminaHumanMethylation27kanno.ilmn12.hg19 Bioc Annotation for Illumina's 27k methylation arrays	annotation	0.6.0		3.23	current
IlluminaHumanMethylation27kmanifest Bioc Annotation for Illumina's 27k methylation arrays	annotation	0.4.0		3.23	current
IlluminaHumanMethylation450kanno.ilmn12.hg19 Bioc Annotation for Illumina's 450k methylation arrays	annotation	0.6.1		3.23	current
IlluminaHumanMethylation450kmanifest Bioc Annotation for Illumina's 450k methylation arrays	annotation	0.4.0		3.23	current
IlluminaHumanMethylationEPICanno.ilm10b2.hg19 Bioc Annotation for Illumina's EPIC methylation arrays	annotation	0.6.0		3.23	current
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 Bioc Annotation for Illumina's EPIC methylation arrays	annotation	0.6.0		3.23	current
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 Bioc Annotation for Illumina's EPIC methylation arrays	annotation	0.6.0		3.23	current
IlluminaHumanMethylationEPICmanifest Bioc Manifest for Illumina's EPIC methylation arrays	annotation	0.3.0		3.23	current
IlluminaHumanMethylationEPICv2anno.20a1.hg38 Bioc Annotation for Illumina's EPIC v2.0 methylation arrays	annotation	1.0.1		3.23	current
IlluminaHumanMethylationEPICv2manifest Bioc Manifest for Illumina's EPIC v2.0 methylation arrays	annotation	1.0.1		3.23	current
IlluminaHumanMethylationMSAanno.ilm10a1.hg38 Bioc Annotation for Illumina's MSA methylation arrays	annotation	0.1.0		3.23	current
IlluminaHumanMethylationMSAmanifest Bioc Package for MSA Infinium array compatibility with minfi	annotation	0.1.1		3.23	current
JASPAR2018 Bioc Data package for JASPAR 2018	annotation	1.1.1	3.6	3.23	current
JASPAR2020 Bioc Data package for JASPAR database (version 2020)	annotation	0.99.10	3.15	3.23	current
JASPAR2022 Bioc Data package for JASPAR database (version 2022)	annotation	0.99.8	3.15	3.23	current
JASPAR2024 Bioc Data package for JASPAR database (version 2024)	annotation	0.99.7	3.18	3.23	current
LowMACAAnnotation Bioc LowMACAAnnotation	annotation	0.99.3		3.23	current
MPO.db Bioc A set of annotation maps describing the Mouse Phenotype Ontology	annotation	0.99.8	3.18	3.23	current
MmAgilentDesign026655.db Bioc Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655)	annotation	3.2.3		3.23	current
MoExExonProbesetLocation Bioc Probe sequence data for microarrays of type MoEx	annotation	1.15.0		3.23	current
Orthology.eg.db Bioc Orthology mapping package	annotation	3.23.0		3.23	current
RaExExonProbesetLocation Bioc Probe sequence data for microarrays of type RaEx	annotation	1.15.0		3.23	current
RmiR.hsa Bioc Various databases of microRNA Targets	annotation	1.0.5		3.23	current
RnAgilentDesign028282.db Bioc Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282)	annotation	3.2.3		3.23	current
adme16cod.db Bioc Codelink ADME Rat 16-Assay Bioarray annotation data (chip adme16cod)	annotation	3.4.0		3.23	current
ag.db Bioc Affymetrix Affymetrix AG Array annotation data (chip ag)	annotation	3.13.0		3.23	current
agcdf Bioc agcdf	annotation	2.18.0		3.23	current
agprobe Bioc Probe sequence data for microarrays of type ag	annotation	2.18.0		3.23	current
ath1121501.db Bioc Affymetrix Affymetrix ATH1-121501 Array annotation data (chip ath1121501)	annotation	3.13.0		3.23	current
ath1121501cdf Bioc ath1121501cdf	annotation	2.18.0		3.23	current