Bioconductor Packages

BiocCaseStudies: Support for the Case Studies Monograph

Bioconductor-specific package checks

General utility functions for developing Bioconductor packages

Access Bioconductor docker images

Illustration of FHIR ingestion and transformation using R

Manage Files Across Sessions

S4 generic functions used in Bioconductor

S4 generic functions for Bioconductor

S4 generic functions for Bioconductor

basilisk and hail

Install/Update Bioconductor, CRAN, and github Packages

View Bioconductor Package Maintainer Information Interactively

Bioconductor facilities for parallel evaluation

An interactive Shiny dashboard for Bioconductor package maintainers

Collection of simple tools for learning about Bioconductor Packages

interface to python sklearn via Rstudio reticulate

General utility functions for Bioconductor packages

Set the appropriate version of Bioconductor packages

Efficient manipulation of biological strings

query gene expression data and plots from BrainStars (B*)

A matrix data storage object held in temporary files

Microarray Data related methods that utlize BufferedMatrix objects

Bumpy Matrix of Non-Scalar Objects

Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor

Cytometry dATa anALYSis Tools

Competitive Balances for Taxonomic Enrichment Analysis in R

CGHbase: Base functions and classes for arrayCGH data analysis.

CNE Detection and Visualization

Identifies false positives of CNV calling tools by using SNV calls

Annotations for City of Hope CpG Island Analysis Pipeline

Drug Response Data Analysis Using CMap Database

COexpression Tables ANalysis

Shiny Application for Interactive CRISPR Screen Visualization, Exploration, Comparison, and Filtering

Package for CTDbase data query, visualization and downstream analysis

Data companion to CTexploreR

Explores Cancer Testis Genes

A mass spectrometry imaging toolbox for statistical analysis

Read and write mass spectrometry imaging files

Construct Benchmarks for Single Cell Analysis Methods

Tool for Evaluation of Cell Identity from Transcription Profiles

Reconstruction, visualization and analysis of branching trajectories

ChIC package data

Quantitative comparison of multiple ChIP-seq datasets

ChIP-seq Target Databases for TFEA.ChIP

ChIP-Seq data scaling according to spike-in control

ChIPXpress Pre-built Databases

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Simulation of ChIP-seq experiments

R interface to a subset of OpenBabel functionalities

Cheminformatics Toolkit for R