Bioconductor Packages

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

Attribute-Weighted Aggregation Data

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

100+ Curated Breast Cancer Gene Expression Data sets

Data and Files for the AssessORF Package

Illumina EPIC data on BeadSorted child saliva cells

Datasets and test data files for the BentoBox package

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

R-side access to BioPlex protein-protein interaction data

"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oleś M, Lu J et al. - experimental data and complete analysis

Carbon Tetrachloride (CCl4) treated hepatocytes

Data to support sexually dimorphic and COPD differential analysis for gene expression and methylation.

COSMIC.67

Genomic coordinates of CTCF binding sites, with orientation

Example data for the ChIPexoQual package, which implements a quality control pipeline for ChIP-exo data

Chimp and human brain data package

DNA methylation-based machine learning models

Data accompanying the DAPAR and Prostar packages

Data Package for DMRcate

Example DNAm Data for DMRsegal

A set of annotation maps describing the entire Disease Ontology

Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"

Supplementary data package for Dona et al. (2013) containing example images and tables

Data for the EpiMix package

Tissue Specific Gene Expression Prediction Models Constructed From Paired DNA Methylation and RNA Counts

EpipwR.data: Reference data for EpipwR

CAGE data from FANTOM3 and FANTOM4 projects

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Illumina HumanMethylation data on sorted blood cell populations

Illumina EPIC data on immunomagnetic sorted peripheral adult blood cells

Illumina 450k data on sorted cord blood cells

Illumina 450k/EPIC data on FACS and MACS umbilical blood cells

Illumina HumanMethylation data on sorted cord blood cell populations

Illumina HumanMethylation data on sorted frontal cortex cell populations

all 90 hapmap CEU samples, 47K expression, 4mm SNP

A set of annotation maps describing the entire Gene Ontology

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

GEO accession data GSE62944 as a SummarizedExperiment

Data employed in the vignette of the GSVA package

Reference data for GenomicDistributions package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Mapping genetic interactions in human cancer cells with RNAi and multiparametric phenotyping

A set of annotation maps describing the entire Human Disease Ontology