Bioconductor Packages

Averaged gene expression in human brain regions from Allen Brain Atlas

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

A subset of arrays from a large acute lymphoblastic leukemia (ALL) study

Example dataset for normalization of Illumina 450k Methylation data

Attribute-Weighted Aggregation Data

Affymetrix Data Files (CEL, CDF, CHP, EXP, PGF, PSI) for Testing

Example of Amplified Data

WGSCS Data for Demonstration Purposes

100+ Curated Breast Cancer Gene Expression Data sets

Data and Files for the AssessORF Package

Analysing Illumina BeadArray expression data using Bioconductor

Illumina EPIC data on BeadSorted child saliva cells

Datasets and test data files for the BentoBox package

R-side access to BioPlex protein-protein interaction data

Carbon Tetrachloride (CCl4) treated hepatocytes

Hub package for the precomputed data of CENTRE and example data

Experiment data for CLAMP package

A Package for CLL Gene Expression Data

Annotations for City of Hope CpG Island Analysis Pipeline

Genomic coordinates of CTCF binding sites, with orientation

Datasets and workflows for the Cardinal MSI

Pre-processed data for use with the CellMapper package

ChIP-seq Target Databases for TFEA.ChIP

Chimp and human brain data package

Data for the CluMSID package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Functional connections between drugs, genes and diseases as revealed by common gene-expression changes

DNA methylation-based machine learning models

Data accompanying the DAPAR and Prostar packages

Data package for DExMA package

Diffuse large B-cell lymphoma expression data

Data Package for DMRcate

Example DNAm Data for DMRsegal

DNA Zoo data package

A set of annotation maps describing the entire Disease Ontology

Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge

Data accompanying the DaparToolshed and Prostar 2 packages

Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion

Experimental data and documented source code for the paper "A Map of Directional Genetic Interactions in a Metazoan Cell"

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Drug versus Disease Data

Data, Clustering Results and Visualization Functions From Duò et al (2018)

Data for the ELMER package

Calculate 'EMT' Scores Based on 'Omics' Data

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010