Bioconductor Packages

Averaged gene expression in human brain regions from Allen Brain Atlas

LRBaseDbs for AnnotationHub

MeSHDbs for AnnotationHub

Metabolites and proteins linked to PathBank pathways (for AnnotationHub)

Metabolites linked to WikiPathways pathways (for AnnotationHub)

Affymetrix Human Genome U133A 2.0 Array (GPL571) Expression Data Package

Affyhgu133Plus2Expr (GPL570) Expression Data Package

Affymetrix Human hgu133a Array (GPL96) Expression Data Package

Affymetrix Mouse Genome 430 2.0 Array (GPL1261) Expression Data Package

WGSCS Data for Demonstration Purposes

100+ Curated Breast Cancer Gene Expression Data sets

Datasets and test data files for the BentoBox package

R-side access to BioPlex protein-protein interaction data

Experiment data for CLAMP package

Annotations for City of Hope CpG Island Analysis Pipeline

Genomic coordinates of CTCF binding sites, with orientation

Pre-processed data for use with the CellMapper package

ChIC package data

ChIP-seq Target Databases for TFEA.ChIP

ChIPXpress Pre-built Databases

Chimp and human brain data package

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Data Package for DMRcate

Example DNAm Data for DMRsegal

A set of annotation maps describing the entire Disease Ontology

Orchestrating Blood Radiation Transcriptomic Data

Test Files for Single-Cell Droplet Utilities

Drug versus Disease Data

Data for the ELMER package

Calculate 'EMT' Scores Based on 'Omics' Data

Single-cell RNA-seq datasets of EMT responses from Cook et al. (2020)

ChIP-seq data of ORC-binding sites in Yeast excerpted from Eaton et al. 2010

Data for the EpiMix package

Tissue Specific Gene Expression Prediction Models Constructed From Paired DNA Methylation and RNA Counts

Download datasets from EMBL-EBI Expression Atlas

Human Functional Interactions (FIs) for splineTimeR package

Tumor, tumor-adjacent normal, and healthy colorectal transcriptomes as SummarizedExperiment objects

Gene expression data from breast cancer cells under FGFR2 signalling perturbation

Master regulators of FGFR2 signalling and breast cancer risk

Various data sets for use with the FunciSNP package

all 90 hapmap CEU samples, 47K expression, 4mm SNP

A set of annotation maps describing the entire Gene Ontology

GEO accession data GSE103322 as a SingleCellExperiment

Placental cell DNA methylation data from GEO accession GSE159526

Data employed in the vignette of the GSVA package

Data used in the examples and vignettes of the GWASTools package

Data package with transcript expression and bi-allelic genotypes from the GEUVADIS project

Accessing The Datasets Of The Human Cell Atlas in R/Bioconductor

Provide programmatic access to the tonsil cell atlas datasets

Collection of high-dimensional cytometry benchmark datasets in Bioconductor object formats