Bioconductor Packages

Curated Prostate Cancer Data

Curation of existing tuberculosis transcriptomic studies

Curated Data from The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Data and analysis scripts for David, Huber et al. yeast tiling array paper

Cancer Dependency Map Data Package

Example data for the dyebias package, which implements the GASSCO method.

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

ExperimentHub package containing model data for predicting preeclampsia status for based on plcaental DNA methylation profile

Illumina DASL example microarray data

RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.

Furrow Segmentation

Auxillary data for gage package

Experimental data for showing functionalities of the genomation package

summarized experiment with expression data from GEUVADIS

an R package for visualization of tree and annotation data

Sample data - Hapmap 100K HIND Affymetrix

Sample data - Hapmap 100K XBA Affymetrix

Sample data - Hapmap 500K NSP Affymetrix

Sample data - Hapmap 500K STY Affymetrix

Sample data - Hapmap SNP 5.0 Affymetrix

Sample data - Hapmap SNP 6.0 Affymetrix

Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not

CellScore Standard Cell Types Expression Dataset [hgu133plus2]

Unknown annotation data (chip hguDKFZ31)

Unknown annotation data (chip hgubeta7)

YRI hapmap + expression (GENEVAR), Build 36, r23a genotypes

Collection of publicly available imaging mass cytometry (IMC) datasets

DKFZ kidney package

Leukemia's microarray gene expression data (expressionSet).

Meta cohort survival data

Sigma mix MSQC1 data

MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)

Multi-sample multi-group scRNA-seq data

ExperimentHub datasets for the nullranges package

Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository

Exploring, analyzing and visualizing functions utilizing the pcxnData package

Correlation coefficients and p values between pre-defined pathway/gene sets

Datasets and test data files for the plotgardener package

rcellminerData: Molecular Profiles and Drug Response for the NCI-60 Cell Lines

Normalized gene expression dataset published by Wollbold et al. [2009] (WOLLBOLD).

Pre-processed data for use with the sampleClassifier package

A Collection of Single-cell ATAC Sequencing Datasets and Corresponding Metadata

Collection of Public Single-Cell Multiome (scATAC + scRNAseq) Datasets

Single-Cell Proteomics Data Package

Spatial allelic expression counts for fly cross embryo

Performing a Spatial Analysis of Multiplexed Tissue Imaging Data

Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)

Tuberculosis Gene Expression Data for Machine Learning

Transcript Quantification Import with Automatic Metadata

Spellman et al. (1998) and Pramila/Breeden (2006) yeast cell cycle microarray data