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tofsims

Bioc removed

Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data

v1.24.0 · GPL-3
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Release Lineage

Entered 3.3 · May 4, 2016

Removed after 3.15 · Apr 27, 2022

1.0 In 13 of 49 releases 3.23

Description

This packages offers a pipeline for import, processing and analysis of ToF-SIMS 2D image data. Import of Iontof and Ulvac-Phi raw or preprocessed data is supported. For rawdata, mass calibration, peak picking and peak integration exist. General funcionality includes data binning, scaling, image subsetting and visualization. A range of multivariate tools common in the ToF-SIMS community are implemented (PCA, MCR, MAF, MNF). An interface to the bioconductor image processing package EBImage offers image segmentation functionality.

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Topics

Software › ResearchField › ImmunoOncology
Software › Infrastructure
Software › Infrastructure › DataImport
Software › Technology › MassSpectrometry
Software › Technology › MassSpectrometry › ImagingMassSpectrometry
Software › ResearchField › Proteomics
Software › ResearchField › Metabolomics

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