posDemux

Description

Demultiplexing and filtering utilities intended for reads with combinatorial barcodes (i.e. PETRI-seq and SPLiT-seq). The demultiplexer algorithm uses the position of the segments to extract and compare the barcodes with the reference (whitelist). A Shiny application is provided to interactively select cutoffs for which barcode combinations to keep.

Code

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Topics

People

• Jakob Peder Pettersen author maintainer
• Centre for new antibacterial strategies (CANS) fnd