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panp

Bioc current

Presence-Absence Calls from Negative Strand Matching Probesets

v1.82.0 · software · GPL (>= 2)
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Release Lineage

Entered 1.8 · Apr 27, 2006

Current · Requires R 4.6

1.0 In 41 of 49 releases 3.23

Description

A function to make gene presence/absence calls based on distance from negative strand matching probesets (NSMP) which are derived from Affymetrix annotation. PANP is applied after gene expression values are created, and therefore can be used after any preprocessing method such as MAS5 or GCRMA, or PM-only methods like RMA. NSMP sets have been established for the HGU133A and HGU133-Plus-2.0 chipsets to date.

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Topics

Software › Infrastructure

People

Peter Warren