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packFinder

Bioc current

de novo Annotation of Pack-TYPE Transposable Elements

v1.24.0 · software · GPL-2
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.11 · Apr 28, 2020

Current · Requires R 4.6

1.0 In 13 of 49 releases 3.23

Description

Algorithm and tools for in silico pack-TYPE transposon discovery. Filters a given genome for properties unique to DNA transposons and provides tools for the investigation of returned matches. Sequences are input in DNAString format, and ranges are returned as a dataframe (in the format returned by as.dataframe(GRanges)).

Code

Code metrics have not been computed for this package yet.

Topics

Software › ResearchField › Genetics
Software › BiologicalQuestion › SequenceMatching
Software › WorkflowStep › Annotation

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