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ompBAM

Bioc current

C++ Library for OpenMP-based multi-threaded sequential profiling of Binary Alignment Map (BAM) files

v1.16.0 · software · MIT + file LICENSE
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Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

This packages provides C++ header files for developers wishing to create R packages that processes BAM files. ompBAM automates file access, memory management, and handling of multiple threads 'behind the scenes', so developers can focus on creating domain-specific functionality. The included vignette contains detailed documentation of this API, including quick-start instructions to create a new ompBAM-based package, and step-by-step explanation of the functionality behind the example packaged included within ompBAM.

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Topics

Software › WorkflowStep › Alignment
Software › Infrastructure › DataImport
Software › Technology › Sequencing › RNASeq
Software
Software › Technology › Sequencing
Software › ResearchField › Transcriptomics
Software › Technology › SingleCell

Depended on by (2)

Bioconductor (2)

SpliceWiz BamScale

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