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miaSim

Bioc current

Microbiome Data Simulation

v1.18.0 · software · Artistic-2.0 | file LICENSE
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Release Lineage

Entered 3.14 · Oct 27, 2021

Current · Requires R 4.6

1.0 In 10 of 49 releases 3.23

Description

Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to (Tree)SummarizedExperiment objects.

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Code

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Topics

Software › Technology › Sequencing › Microbiome
Software
Software › Technology › Sequencing
Software › Technology › Sequencing › DNASeq
Software › Technology › Sequencing › ATACSeq
Software › BiologicalQuestion › Coverage
Software › WorkflowStep › Visualization › Network

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