ggmanh
Bioc currentVisualization Tool for GWAS Result
Release Lineage
Entered 3.15 · Apr 27, 2022
Current · Requires R 4.6
Description
Manhattan plot and QQ Plot are commonly used to visualize the end result of Genome Wide Association Study. The "ggmanh" package aims to keep the generation of these plots simple while maintaining customizability. Main functions include manhattan_plot, qqunif, and thinPoints.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
47 10 exported
Complexity
4.8 avg / 24 max
Call network
47 nodes / 48 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
3,616
Files
36
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
10
Internal functions
37
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.05
testthat edition
3
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
0%
Unsafe pattern score
0
Dep constraint coverage
6.7%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
–
System requirements
–
C++ standard
–
License
MIT + file LICENSE
License flags
SPDX valid, OSI approved
History
Versions
9
First release
2022-04-26
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
5
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 93%
- Return-value docs
- 89%
- References docs
- 0%
Topics
Depended on by (2)
Bioconductor (1)
CRAN (1)
People
- John Lee author maintainer
- John Lee author
- Xiuwen Zheng contributor dtc