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geneplast

Bioc current

Evolutionary and plasticity analysis of orthologous groups

v1.38.0 · software · GPL (>= 2)
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Release Lineage

Entered 3.4 · Oct 18, 2016

Current · Requires R 4.6

1.0 In 20 of 49 releases 3.23

Description

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

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Topics

Software › ResearchField › Genetics
Software › BiologicalQuestion › GeneRegulation
Software › ResearchField › SystemsBiology

Depended on by (1)

Bioconductor (1)

geneplast.data

People

Mauro Castro