distSTRING

Description

distSTRING calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis. It uses scoring matrices to be used in these pairwise distance calcualtions which can be adapted to any scoring for DNA or AA characters. E.g. by using literal distances distSTRING calcualtes pairwise IUPAC distances.

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People

• Kristian K Ullrich author maintainer