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crisprBowtie

Bioc current

Bowtie-based alignment of CRISPR gRNA spacer sequences

v1.16.0 · software · MIT + file LICENSE
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.15 · Apr 27, 2022

Current · Requires R 4.6

1.0 In 9 of 49 releases 3.23

Description

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.

Topics

Software › Technology › CRISPR
Software › ResearchField › FunctionalGenomics
Software › WorkflowStep › Alignment

Depended on by (2)

Bioconductor (2)

crisprDesign crisprVerse

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