combi
Bioc currentCompositional omics model based visual integration
Release Lineage
Entered 3.11 · Apr 28, 2020
Current · Requires R 4.6
Description
This explorative ordination method combines quasi-likelihood estimation, compositional regression models and latent variable models for integrative visualization of several omics datasets. Both unconstrained and constrained integration are available. The results are shown as interpretable, compositional multiplots.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
57 7 exported
Complexity
6.4 avg / 90 max
Call network
57 nodes / 72 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,653
Files
139
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
7
Internal functions
50
Testing & CI
Has tests
Yes
Test-to-code ratio
0.03
testthat edition
–
CI present
No
CI type
[]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
0
Dep constraint coverage
5.6%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0
System requirements
–
C++ standard
–
License
GPL-2
License flags
SPDX valid, OSI approved
History
Versions
13
First release
2020-04-27
Latest release
2026-04-28
Avg cadence
183 days
Cold removal rate
–
Dep drift
1
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 90%
- Return-value docs
- 100%
- References docs
- 0%
Topics
People
- Stijn Hawinkel maintainer author