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biomformat

Bioc current

An interface package for the BIOM file format

v1.40.0 · software · GPL-2
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Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

This is an R package for interfacing with the BIOM file format. This package includes basic tools for reading biom-format files, accessing and subsetting data tables from a biom object (which is more complex than a single table), as well as limited support for writing a biom-object back to a biom-format file. The design of this API is intended to match the python API and other tools included with the biom-format project, but with a decidedly "R flavor" that should be familiar to R users. This includes S4 classes and methods, as well as extensions of common core functions/methods.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › Infrastructure › DataImport
Software › ResearchField › Metagenomics
Software › Technology › Sequencing › Microbiome

Depended on by (11)

Bioconductor (10)

animalcules iSEEtree metagenomeSeq MGnifyR mia microbiomeExplorer MicrobiotaProcess phyloseq MetaScope microbiomeMarker

CRAN (1)

metacoder

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