Skip to content

biodb

Bioc current

Biodb, a Library and a Development Framework for Connecting to Chemical and Biological Databases

v1.20.0 · software · AGPL-3
View on Bioconductor ↗ Source ↗

Release Lineage

Entered 3.13 · May 20, 2021

Current · Requires R 4.6

1.0 In 11 of 49 releases 3.23

Description

The biodb package provides access to standard remote chemical and biological databases (ChEBI, KEGG, HMDB, ...), as well as to in-house local database files (CSV, SQLite), with easy retrieval of entries, access to web services, search of compounds by mass and/or name, and mass spectra matching for LCMS and MSMS. Its architecture as a development framework facilitates the development of new database connectors for local projects or inside separate published packages.

Code & tests

Open call graph →

Code intelligence has not been computed for this package yet.

Code

Code metrics have not been computed for this package yet.

Topics

Software
Software › Infrastructure
Software › Infrastructure › DataImport
Software › WorkflowStep › Pathways › KEGG

Depended on by (10)

Bioconductor (10)

phenomis biodbChebi biodbExpasy biodbHmdb biodbKegg biodbLipidmaps biodbMirbase biodbNcbi biodbNci biodbUniprot

People