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UCSC.utils

Bioc current

Low-level utilities to retrieve data from the UCSC Genome Browser

v1.8.0 · software · Artistic-2.0
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Release Lineage

Entered 3.19 · May 1, 2024

Current · Requires R 4.6

1.0 In 5 of 49 releases 3.23

Description

A set of low-level utilities to retrieve data from the UCSC Genome Browser. Most functions in the package access the data via the UCSC REST API but some of them query the UCSC MySQL server directly. Note that the primary purpose of the package is to support higher-level functionalities implemented in downstream packages like GenomeInfoDb or txdbmaker.

Code

Code metrics have not been computed for this package yet.

Topics

Software › Infrastructure
Software › BiologicalQuestion › GenomeAssembly
Software › WorkflowStep › Annotation
Software › BiologicalQuestion › GenomeAnnotation
Software › Infrastructure › DataImport

Depended on by (3)

Bioconductor (3)

GenomeInfoDb GenomicRanges txdbmaker

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