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SMITE

Bioc current

Significance-based Modules Integrating the Transcriptome and Epigenome

v1.40.0 · software · GPL (>=2)
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Release Lineage

Entered 3.3 · May 4, 2016

Current · Requires R 4.6

1.0 In 21 of 49 releases 3.23

Description

This package builds on the Epimods framework which facilitates finding weighted subnetworks ("modules") on Illumina Infinium 27k arrays using the SpinGlass algorithm, as implemented in the iGraph package. We have created a class of gene centric annotations associated with p-values and effect sizes and scores from any researchers prior statistical results to find functional modules.

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Topics

Software › ResearchField › Immunology › ImmunoOncology
Software › BiologicalQuestion › DifferentialMethylation
Software › BiologicalQuestion › DifferentialExpression
Software › ResearchField › SystemsBiology
Software › BiologicalQuestion › NetworkEnrichment
Software › BiologicalQuestion › GenomeAnnotation
Software › WorkflowStep › Visualization › Network
Software › Technology › Sequencing
Software › Technology › Sequencing › RNASeq
Software › BiologicalQuestion › Coverage

People

Neil Ari Wijetunga