Rtpca
Bioc currentThermal proximity co-aggregation with R
Release Lineage
Entered 3.12 · Oct 28, 2020
Current · Requires R 4.6
Description
R package for performing thermal proximity co-aggregation analysis with thermal proteome profiling datasets to analyse protein complex assembly and (differential) protein-protein interactions across conditions.
Test coverage
Line coverage
–
Expression
–
Tests / Examples
–
Functions
39 8 exported
Complexity
2 avg / 7 max
Call network
39 nodes / 40 edges
Test coverage is not measured for Bioconductor packages; nodes fall back to a neutral fill.
Call graph
Open call graph →Lowest coverage
Per-function coverage is not measured for this package yet.
Code
Structure
Lines of code
5,412
Files
87
Compiled share
0%
Has compiled src
No
Language breakdown
API
Exported functions
9
Internal functions
31
Recent export changes
Testing & CI
Has tests
Yes
Test-to-code ratio
0.39
testthat edition
–
CI present
Yes
CI type
["travis"]
PR gated
No
Docs
Roxygen coverage
100%
Health & Security signals
Informational signals; not verdicts.
on.exit coverage
–
Unsafe pattern score
3
Dep constraint coverage
0%
Secret pattern count
0
Bundled 3rd-party code
2 items
Portability & License
Min R version
4.0.0
System requirements
–
C++ standard
–
License
GPL-3
License flags
SPDX valid, OSI approved
History
Versions
12
First release
2020-10-27
Latest release
2026-04-28
Avg cadence
182 days
Cold removal rate
–
Dep drift
0
LOC over versions
Per-file churn detail lives in the source pipeline: https://github.com/r-observatory/bioc-code-metrics.
Documentation
- Examples that run
- 100%
- Documented parameters
- 100%
- Return-value docs
- 100%
- References docs
- 7%
Topics
People
- Nils Kurzawa author maintainer
- André Mateus author
- Mikhail M. Savitski author